Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05287 ATGAAGCGGACGATTGTCTCAGTTTCTTCATTAGGAACCTCATCATCAGCTTCCTGTTCTATACAGCGAAAAGAGAACAAGCGGCGAAAACTTCAACGAACTTCATCTTCCGGTTGGCTGTCTTCGTGTTCTCCTACCATGAATCAGGATGAGTTTTCGAAGTCTGTGGAACAAGTAGGATGGACTCCTATGCAGGACAAAATGCTGTTAGAACTGACAGTAGACGCTGTTCGACGAGCAGGAATATTCTCGAGTTGGGAGAATGCGAAGCCAATAGAGAGGAGTCTTAAAGTATTAGTACTAGAATCCTTTTCTGATGTTGTTGGGAGCCCATACTATGTTGCACCGGAAGTCTTGCGCAAACTATATGGACCTGAATCCGATGTGTGGAGTGCCGGCGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCAGAAACTGAACCGGGGATCTTCCGACAGATTTTAATAGGAAAAATTGATTTTCAGTCTGAGCCTTGGCCTAGCATTTCAGACAGCGCAAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAGAACAAGGCTAACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTATTGACTCGGCAGTTTTATCACGTCTGAAGCAATTCTCTGCAATGAATAAACTGAAAAAGATGGCTTTGCGTGTTATTGCTGAGCGGCTATCTGAGGAAGAAATTGGCGGCCTGAAAGAGTTATTCAAGATGATTGACACCGACAGCAGTGGAACCATAACATTTGATGAGTTAAAAGATGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCCAGGATCTTATGGATGCTGCGGATGTTGATAAAAGCAGGACAATCGACTACGGTGAATTCATTGCTGCAACTGTTCATTTAAATAAGCTGGAGAGAGAAGAAAACCTGTTGTCAGCCTTCGCCTATTTTGACAAAGATGCTAGTGGTTACATAACGATTGATGAGATTCAACAAGCTTGTAAAGACTTTGGTTTAGAAGATATCCACATTGATGAAATAATCAAGGAAATTGATCAAGACAATGATGGACAAATAGATTATGGAGAATTTGCTGCAATGATGAGAAAGGGAAATGGAGGAATAGGAAGAAGAACAATGAGAAACACACTAAATTTAAGAGATGCTTTGGGATTAGTAGACAATGGATCCAATCAAGTTATTGATGGTTATCTTAACTAA 1263 0.4109 MKRTIVSVSSLGTSSSASCSIQRKENKRRKLQRTSSSGWLSSCSPTMNQDEFSKSVEQVGWTPMQDKMLLELTVDAVRRAGIFSSWENAKPIERSLKVLVLESFSDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILIGKIDFQSEPWPSISDSAKDLIRKMLDQNPRTRLTAHEVLRHPWIVDDNIAPDKPIDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFDELKDGLKRVGSELMESEIQDLMDAADVDKSRTIDYGEFIAATVHLNKLEREENLLSAFAYFDKDASGYITIDEIQQACKDFGLEDIHIDEIIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRNTLNLRDALGLVDNGSNQVIDGYLN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05287 420 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Trre7g05287 420 ProSiteProfiles EF-hand calcium-binding domain profile. 283 318 IPR002048 GO:0005509
Trre7g05287 420 Gene3D - 317 420 - -
Trre7g05287 420 MobiDBLite consensus disorder prediction 33 47 - -
Trre7g05287 420 CDD EFh 252 311 IPR002048 GO:0005509
Trre7g05287 420 Pfam Protein kinase domain 103 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05287 420 PANTHER SERINE/THREONINE-PROTEIN KINASE 95 378 - -
Trre7g05287 420 CDD EFh 324 383 IPR002048 GO:0005509
Trre7g05287 420 ProSiteProfiles EF-hand calcium-binding domain profile. 319 354 IPR002048 GO:0005509
Trre7g05287 420 ProSiteProfiles EF-hand calcium-binding domain profile. 357 388 IPR002048 GO:0005509
Trre7g05287 420 FunFam Calcium-dependent protein kinase SK5 114 209 - -
Trre7g05287 420 ProSitePatterns EF-hand calcium-binding domain. 260 272 IPR018247 -
Trre7g05287 420 FunFam Calcium-dependent protein kinase SK5 317 412 - -
Trre7g05287 420 MobiDBLite consensus disorder prediction 19 47 - -
Trre7g05287 420 SMART efh_1 287 315 IPR002048 GO:0005509
Trre7g05287 420 SMART efh_1 251 279 IPR002048 GO:0005509
Trre7g05287 420 SMART efh_1 357 385 IPR002048 GO:0005509
Trre7g05287 420 SMART efh_1 323 351 IPR002048 GO:0005509
Trre7g05287 420 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Trre7g05287 420 Gene3D - 205 313 - -
Trre7g05287 420 ProSitePatterns EF-hand calcium-binding domain. 366 378 IPR018247 -
Trre7g05287 420 FunFam calcium-dependent protein kinase SK5 241 313 - -
Trre7g05287 420 SUPERFAMILY Protein kinase-like (PK-like) 103 227 IPR011009 -
Trre7g05287 420 ProSiteProfiles EF-hand calcium-binding domain profile. 247 282 IPR002048 GO:0005509
Trre7g05287 420 Pfam EF-hand domain pair 322 383 IPR002048 GO:0005509
Trre7g05287 420 Pfam EF-hand domain pair 252 312 IPR002048 GO:0005509
Trre7g05287 420 Gene3D Transferase(Phosphotransferase) domain 1 83 204 - -
Trre7g05287 420 SMART serkin_6 3 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05287 420 SUPERFAMILY EF-hand 243 384 IPR011992 -
Trre7g05287 420 ProSitePatterns EF-hand calcium-binding domain. 296 308 IPR018247 -
Trre7g05287 420 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05287 Trre-Chr7 59195179 59199375 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05287 106 412 EF-hand Containing Proteins AT4G09570 76.452 4.08e-173 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre7g05287 Pkinase 2.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05287 K13412 - gmx:547825 592.038