Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05283 ATGGGTAGATCCCCTTGCTGTGAAAAACAACATACCAACAAAGGTGCTTGGTCTAAAGAAGAAGATGACCGTCTCATAAAATACATCAAAGAAAACGGTGAAGGTTGTTGGCGTTCTCTTCCCAAAGCCGCTGGTTTGGCTCGATGTGGTAAAAGTTGCAGACTCAGATGGATTAATTACCTCAGACCTGATCTTAAGAGAGGAAACTTCACTCCTCAAGAAGATGAACTCATCATTAGCCTCCACGCTGCTGTTGGTAACAAATGGTCTTTAATTGCTCAAAAATTGTCCGGAAGAACTGACAATGAAATCAAGAATTATTGGAACACGCACATCAAACGTAAACTCCAAAGCCGTGGAATTGATCCTTCAACTCATCGTCCATTCCCCCGTTTTTCTGACACCGCTGCTGCCGTTAGTACTTCCTCAACAACCACTGCCTCGGCAGCCGCTGTCTCTCCCACTCTGTTGCCTGTGGTTTCCACGCAAGTGGTCCCCACAAGCAACGAGAGTAGTAGTAGCAGTGTAAGCCACAACAAAATCAAGAGCGAATTTCAGTTATTCAGCAGTACTACAAGTGGCTCTTTGAAACAAAAGTTTGTTGTAACTGATTCTGGTAATGGTGGTGGTGTTGAAGATTCAGTTTCAAATACTAGCAGTGGCGTTACCGTTGAAGAAACAGCCTATCATCCTCATCCTCCACAAATCAACTTGGAACTTTCATTGGCTCTAACTTCTCAACAGCCACAAGGTGGGTGTCTCTATCCTCAAAATGGTGGTAACTACAATACCATGCCTAATGTTGGAGCTTCTGTTGTTGCTTCATCGTCTGCTGCTAGTGCTACCACCGGCGCCGGTTATTGTTATTTTAAATATTTCGGAGCTGGGATTCTCAAATTTTGA 903 0.4396 MGRSPCCEKQHTNKGAWSKEEDDRLIKYIKENGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTPQEDELIISLHAAVGNKWSLIAQKLSGRTDNEIKNYWNTHIKRKLQSRGIDPSTHRPFPRFSDTAAAVSTSSTTTASAAAVSPTLLPVVSTQVVPTSNESSSSSVSHNKIKSEFQLFSSTTSGSLKQKFVVTDSGNGGGVEDSVSNTSSGVTVEETAYHPHPPQINLELSLALTSQQPQGGCLYPQNGGNYNTMPNVGASVVASSSAASATTGAGYCYFKYFGAGILKF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05283 300 CDD SANT 69 112 IPR001005 -
Trre7g05283 300 CDD SANT 16 61 IPR001005 -
Trre7g05283 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre7g05283 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre7g05283 300 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre7g05283 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre7g05283 300 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre7g05283 300 SMART sant 13 63 IPR001005 -
Trre7g05283 300 SMART sant 66 114 IPR001005 -
Trre7g05283 300 Gene3D - 69 129 - -
Trre7g05283 300 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 186 - -
Trre7g05283 300 FunFam MYB-related transcription factor 13 66 - -
Trre7g05283 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre7g05283 300 Gene3D - 14 66 - -
Trre7g05283 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre7g05283 300 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05283 Trre-Chr7 59141754 59143003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05283 1 184 MYB Transcription Factor Family AT4G38620 64.324 2.39e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g05283 Myb_DNA-binding 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05283 K09422 - gmx:100808083 269.626