Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05262 ATGGCTGCTACTAATAGCTCTTTGCCATCAGCATATGCAACTAGTGCTGCAGTACCAGATTGGTTAAACAAAGGAGACAACACATGGCAAATGGTAGCAGCAACACTTGTCGGAATCCAAAGCATGCCGGGACTAGTTATCCTCTATGGCAGCATAGTGAAAAAGAAATGGGCTGTAAACTCTGCTTTCATGGCTCTCTATGCTTTTGCAGCAGTTATAATCTGTTGGGTTACATGGGCTTATAAGATGTCATTTGGTGAAAAACTTTTACCCTTTTGGGGTAAAGCCGGGCCTGCGTTAGGCCAGAAATTTCTAATTAAACAGGCCGCGCTACCAAGCACGGCCCATTATTATAATAATGGGGATTTGGAAACTGCTGAGATTGATCCATTTTATCCAATGGCTACTATGGTTTGGTTTCAGTGTGTTTTTGCTGCAATTGCATTAGTTATATTGGCTGGTTCTGTTTTGGCTAGAATGAGTTTTAAGGCATGGATGATGTTTGTGCCACTTTGGTTAACTTTTTCTTATACTGTTGGTGCTTTTAGTGTGTGGGGTGGTGGATTCTTGTTTCAATGGGGTGTTATGGATTATTCTGGTGGTTATGTTATTCATCTTTCTTCTGGGATTGCTGGTTTCACCGCTGCTTATTGGGTTGGGCCTAGATCAAAGAAGGACAGAGAAAGATTCCCACCAAACAATGTGTTACTAACGTTGGCAGGGGCAGGTTTACTATGGTTGGGATGGGCAGGTTTCAACGGTGGAGATCCTTATTCAGCCAACACTGATTCTTCAATGGCTGTTCTTAACACAAACATTTGTGCTGCCACAAGTCTCCTAGTATGGACATGGCTTGATGTCATATTCTTTAAGAAACCATCAGTTATTGGAGCTGTTCAGGGCATGATCACCGGCCTTGTTTGCATCACTCCCGGTGCCGGTCTCGTTCAAGGATGGGCTGCCATAATTATGGGCATACTATCAGGAAGTGTACCATGGTACACAATGATGGTGCTTGGAAAAAAGTTTACAATATTTCAAAAGGTTGACGACACCCTCGCCGTGTTCCACACTCACGCCGTGGCTGGCCTTCTAGGTGGTGTACTAACCGGCCTATTCGCCGAGCCAACCCTAAGTACTCTCTTTCTCCCCGTCACCAATTCCAAAGGAGGTGTCTATGGTGGCCCCGGCGGAGTCCAAATCCTCAAACAAATAGTTGGAGCTTTATTCATCATTGGATGGAACATTGTTGCCACTTCAATTATTTGTTTAGTTATAGGTTTGATTGTTCCTTTGAGAATGACCGAAGAAGAATTGCTTATTGGAGATGATGCGGTTCATGGGGAAGAAGCTTATGCTTTGTGGGGTGATGGTGAGAAACTTAGCCTCTACAAAGATGATACTACAAGTCATGGAGTTTTGGCATCAAGTGGTGCCACTCAAGTTGTCTAG 1452 0.4394 MAATNSSLPSAYATSAAVPDWLNKGDNTWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQAALPSTAHYYNNGDLETAEIDPFYPMATMVWFQCVFAAIALVILAGSVLARMSFKAWMMFVPLWLTFSYTVGAFSVWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIIMGILSGSVPWYTMMVLGKKFTIFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPTLSTLFLPVTNSKGGVYGGPGGVQILKQIVGALFIIGWNIVATSIICLVIGLIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSLYKDDTTSHGVLASSGATQVV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05262 483 PANTHER AMMONIUM TRANSPORTER MEP2 12 461 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre7g05262 483 NCBIfam ammonium transporter 26 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre7g05262 483 ProSitePatterns Ammonium transporters signature. 197 222 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre7g05262 483 Pfam Ammonium Transporter Family 29 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre7g05262 483 FunFam Ammonium transporter 10 455 - -
Trre7g05262 483 SUPERFAMILY Ammonium transporter 21 434 - -
Trre7g05262 483 Gene3D Ammonium transporter AmtB like domains 2 455 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05262 Trre-Chr7 58986094 58989471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05262 134 471 Inorganic Solute Cotransporters AT2G38290 71.006 6.48e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05262 K03320 - gmx:100785993 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05262 7 58986094 58989471 Trre7g05262 7 58986094 58989471 ECH