Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05261 ATGTTGCTCCCAAATTCTAGGAGGTTTCCTCTGAAAATATTGATGAGGTGGTTCATATTCCTTGTTGTCTTGAAACTCAGTTTTGCAATACAAGATCCTGACATAGAAGGTGAAGCTCTGCTTGATCTTTTGAATTACCTCAATGATTCCAATAATCAAATAAATGATTGGGATAGTCATTTAGTGAGCCCTTGTTTCAGTTGGTCACATGTAACTTGTAAAAATGGACATGTCATATCTCTGACCCTGACTTCCATTGGATTTTCTGGAACACTTTCACCATCAATTACCAAATTGAAATATTTGGTTAACTTGGAATTGCAGAACAACAATATATCCGGCACTTTACCTGATTACATTGCCAACTTGACATACCTACAATATCTAAATCTTGCTAACAATAATTTCAATGGTTCTATACCAGTTATATGGGGTCAACTATCCAGTCTCAAGAATGTGGATCTGTCATCTAATGGTCTTACTGGAACTATCCCAACACAACTCTTTTCAGTTCCAATGTTTAACTTTTCAGATACGCGCCTTGGTTGCGGCTCTAACTTCAAGCAGCCTTGTGTTTCTAAAACTGATCATCCAGTTTCAACCAAAAAATCAAAAGTGGCAAAAGCCGTGCGTTATGCGAGTTATGGTGCATTCGCACTTCTGATTCTTGGTGCCATCTTTACATATAGACACTATCAAAAGCAAAGACACAAAAGTGATATCTTTGTTGATGTTTTAGGTGAAGATGAGAGCAAAATTTCTTTTGGACAACTACGAAAGTTTTCTTTGCGCGAACTCCAACTTGCAACTAAAAACTTCAGTGAAAGCAATGTAATTGGCCAAGGTGGTTTTGGAAAAGTGTACAGAGGACTACTCTCAGATAACACAAAAGTCGCTGTGAAACGCCTCACTGATTATCATAATCCTGGTGGCGAGGCTGCGTTCGAGAGAGAAGTGCATCTCATTAGTGTCGCGGTTCATAGAAACCTCCTAAGACTAATTGGATTCTGTACAACCTCAACTGAAAGAATCCTTGTATATCCTTTCATGGAAAATCTAAGCGTAGCATATCGATTAAGAGATTTAAAATCTGATGACAAAGGCTTGGATTGGCCAACAAGGAAGCGTGTGGCTTTCGGTACAGCGCACGGTTTGGAATATCTACACGAGCAATGCAATCCGAAGATAATTCACCGTGATCTAAAGGCTGCGAATATCCTTTTAGATGACGAGTTTGAACCTGTTCTAGGTGATTTTGGACTAGCCAAGCTGGTTGATGTAAGGATGAGTCATGTTACCACTCAAGTGCGCGGTACAATGGGTCACATTGCCCCGGAATATTTGTCAACCGGAAAATCATCAGAGAAGACAGATGTTTTTGGATATGGCATAACACTTCTAGAACTTATCACAGGTCAGCGCGCAATTGACCTCTCTCGGCTTGAAGAGGAGGAGGATGTTCTTCTCATCGATCATGTAAAAAATCTACTAAGAGAAAATAGAGTGGAGGACATAGTGGACAACAATTTGGAAACTTTTGATCCCAAAGAAGTTGAAACCATTCTTCAAGTCGCATTACTTTGCACGCAAGCCTATCCTGAGGATCGTCCGACAATGTCAGAAGTGGTAAAAATGTTGCAGGGAGTCGGATTAGCGGATAGATGGGCCGACTGGAAACAACTTGAAGAAACTAGAAATGAAGAAATAGAATTATCACTCATGACTCACCAATTTCCTTGGAGTGATGAATCTACTCTTGATCAAGAAGCTATACAACTTTCAAGAGCAAGATAG 1794 0.3986 MLLPNSRRFPLKILMRWFIFLVVLKLSFAIQDPDIEGEALLDLLNYLNDSNNQINDWDSHLVSPCFSWSHVTCKNGHVISLTLTSIGFSGTLSPSITKLKYLVNLELQNNNISGTLPDYIANLTYLQYLNLANNNFNGSIPVIWGQLSSLKNVDLSSNGLTGTIPTQLFSVPMFNFSDTRLGCGSNFKQPCVSKTDHPVSTKKSKVAKAVRYASYGAFALLILGAIFTYRHYQKQRHKSDIFVDVLGEDESKISFGQLRKFSLRELQLATKNFSESNVIGQGGFGKVYRGLLSDNTKVAVKRLTDYHNPGGEAAFEREVHLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKSDDKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEPVLGDFGLAKLVDVRMSHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELITGQRAIDLSRLEEEEDVLLIDHVKNLLRENRVEDIVDNNLETFDPKEVETILQVALLCTQAYPEDRPTMSEVVKMLQGVGLADRWADWKQLEETRNEEIELSLMTHQFPWSDESTLDQEAIQLSRAR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05261 597 SUPERFAMILY L domain-like 37 172 - -
Trre7g05261 597 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05261 597 FunFam Nuclear pore complex protein NUP107 34 181 - -
Trre7g05261 597 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 556 - -
Trre7g05261 597 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05261 597 FunFam Somatic embryogenesis receptor-like kinase 1 350 566 - -
Trre7g05261 597 Gene3D Ribonuclease Inhibitor 33 197 IPR032675 -
Trre7g05261 597 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05261 597 SUPERFAMILY Protein kinase-like (PK-like) 252 547 IPR011009 -
Trre7g05261 597 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Trre7g05261 597 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Trre7g05261 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Trre7g05261 597 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
Trre7g05261 597 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Trre7g05261 597 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Trre7g05261 597 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05261 Trre-Chr7 58977698 58981122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05261 33 592 Receptor kinase-like Gene Family AT5G65240 56.463 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre7g05261 Pkinase 6.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05261 - - gmx:100800886 992.645