Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05260 ATGCAATTGATTCCGTATTTATCACTTAAGATGAAGGTGAAGAAGGGTTGGCTAGCTGTTCAAGTTGGTTCAGAGGAAGAATTATCTCAAGAGGGAGGTGTAGATGATTCACAAAGATTTGTGATTCCTATTTCTTATCTTTATCATCCACTTTTCAAACGCCTTCTTGACAAAGCTTATGAGATTTATGGCTACAACACTGATGGTCCTCTTAAGTTACCATGTTCTGTTGATGACTTTGTTCACCTCAGATGGCGAATTCAAAAAGAATCCACACCTAATTACCATCACCACCAACATCACAATTATCATCATCATATTCTTCCTCATGCTTTGTCTTTCAATTCTTGTTAA 354 0.3672 MQLIPYLSLKMKVKKGWLAVQVGSEEELSQEGGVDDSQRFVIPISYLYHPLFKRLLDKAYEIYGYNTDGPLKLPCSVDDFVHLRWRIQKESTPNYHHHQHHNYHHHILPHALSFNSC 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05260 117 Pfam Auxin responsive protein 12 86 IPR003676 GO:0009733
Trre7g05260 117 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 12 83 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05260 Trre-Chr7 58966668 58967731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05260 13 83 Calmodulin-binding Proteins AT3G43120 45.070 7.78e-13 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05260 K14488 - gmx:100809305 159.458