Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05245 ATGGGCAAGGAAAATGAATCACCTGTGAAGAAAGAAGTTAGCAGTGACGGTGTTGAGATCGGGAATTTAGAATCTCAATCTCGACTTAGTTTGGAGAGGGAGATGGGACTGGCGAGTTGTCGTGTGTGCCAGTGTGCTGAGTCTGATAAACGGGGTGATGCTGCCTTAGAATTTTTGGGCATCACTCCGGTTATAGAAAGCAAGGGGGAAACTAAGTCTGATGACAATCCAAAAGATGTGACTCTTAACCGAAACTTTGAAAGCAAAACTGGAATGATGGAATTTGTAGGCCCTGATGGGGAGGTTTTCATTTGTAAGAATGATTTGGAAAATGGTTTGTCTCATGAAGATACGCTAATTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTACATTATGCTTGTGCGCTCAAGTGGTTTATCAACCATGGATCTACCATTTGTGAAATATGCGGACATATAGCAAATAATATTAGAATATCTGACTTCAATAAGGTTATTGGTTCTTTAAAAGAGTACGAATCATTGAGGGAAAGAACTGTCAATGGAGTTCCGGGTCCTGCACAAGATCATCCAAATACTGGCGTGGATCCTGATGCTGTGGCTGCTATTCGGAGGCAACGGTTAAGTGAAATTGCACTATGGTTTTGTCCTCATAATAGCAACAACTTTAACAACAATAGCAACATGGACTCAGTTTCACAGCTTGTTTCTGAGCAGCCTTTGAATATTGTTGTCGAAGAAGCTGGCCCCGTACAGAATCCTGCAACTAAGTGGGCCGTAGAGTGTACTGGGATCCTGCTTGCTACAGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAATATTGCAAGGAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGATTTTTTTCCGCTTCTTTGTGCTTACAAGAATCAAGTATGGACCGGCACGTTATTGGGCAATACTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACGCACAGTGCCCATACAACGTGA 1059 0.4278 MGKENESPVKKEVSSDGVEIGNLESQSRLSLEREMGLASCRVCQCAESDKRGDAALEFLGITPVIESKGETKSDDNPKDVTLNRNFESKTGMMEFVGPDGEVFICKNDLENGLSHEDTLIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRISDFNKVIGSLKEYESLRERTVNGVPGPAQDHPNTGVDPDAVAAIRRQRLSEIALWFCPHNSNNFNNNSNMDSVSQLVSEQPLNIVVEEAGPVQNPATKWAVECTGILLATGLLTITLAWLIAPRVGKNIARSGLHILLGGVCALTVVIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05245 352 SUPERFAMILY RING/U-box 116 156 - -
Trre7g05245 352 ProSiteProfiles Zinc finger RING-CH-type profile. 97 160 IPR011016 GO:0008270
Trre7g05245 352 SMART ringv_2 104 154 IPR011016 GO:0008270
Trre7g05245 352 Pfam RING-variant domain 116 153 IPR011016 GO:0008270
Trre7g05245 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 156 IPR013083 -
Trre7g05245 352 PANTHER ZINC FINGER, RING-CH-TYPE 17 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05245 Trre-Chr7 58847841 58850432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05245 1 342 C3H Transcription Factor Family AT5G08750 62.147 1.50e-144 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05245 - - gmx:100805323 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05245 7 58847841 58850432 Trre7g05245 7 58847841 58850432 ECH