LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05229	ATGGCGAACAAGAGCGTGAAGAAACCACAGAGTCTCAACGATAGTCACTATCGCTTCCTTCAAGATCTCTCCGCTCCTCCCAAAACCTCTTCCAAACCACTCGCTGATGAAAACGATACTCCGATTCAACCTCGAAACCTCATCTACCAAGACGTTGATGATGATACCATTCCCCAGTTTTCTGCTATCACTGACTTCGATTCTCCGATCGGTCAAAATTCTCCCGAGAATATTGAACCAGTTAGGGTAGAAGAAGCTCCTATTCGTAACGAGGTTCCACGGTTTTCCGATAATTGTTCACTTAGTCAAAAATATCGGGAGAGTCGTCAACCAAGTGCCGTAGAAGAAGCTCCTCTTTCTGAGTTTCCACAGTTTTTTTATGATTATTCTTATAGTCAAAATTCTCGAGAGAATCGCAAACCAGTTAAGGCAGTAGAACCTCTTAGTCAAAATTATGCAGAGAATCACCAACCAGTTAAGCCAGTAGCTCCTCTAAGTCAAAATTATGCAGAGAATCGCCAACCAGTTAAGGTAAAAGAAGCTCTTCTTCCAAAGGAGGTGGTTCCACAGAGAGTTGATAATAATTCACTTAAGGAGGAAAAGAATACCAAGGTTAAGGTGCAAGGGCGCCGCCGCCTTTGCAAGGCTGCGGATAAAGAAGCTGCCAAAAAGGTGGCAGTTGATGAACCTAAGCTTGACGATCTTGCTGACTTCGATTCGCCTATTCCGGTGCGGAAAAATGTGATTGAGATTGAAGAAAGTAAGGGTAAGAGTCAAATTAGGGATATTTTGAATGACCTAACCTCCAGGTTTGATGCGCTATCGGTTGAGAAGAAGCCGCAGCCCAAACCGGTGCCAAAGCCTGTTGAGCGTTTTGAAGGAGGGAAAGAAATTTTTGAAGATGAGGGTTTGGAGTTTGGGAGTGCTGGATCTTCATTTTCTCCGAAACAGGATCCCCATGACACCTTATCAAAGGATACTAAGAATGATAGTGGTGATATTGAGTATGAATCAGATGATGAATCAGATGATTCGGTTCAGGTGTTGGATCACTTTGAGCCTGAGAATGATGGCTCTATAACATTGAGTGACCCACGGTCTACATATAAGTTGCAGCCTAAGATTGCGAAAATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTGGCTGGACTGTTTTATTCACGTTTAATTAGAAGGGTATTGGTTGTGGCCCCAAAAACACTATTGCCACATTGGATCAAAGAGTTATCGGCTGTTGGTCTATCTGAGAAGACAAGAGAATATTTTGGATCCTGTGCCAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACTTATGATATTGTCCGCAACAATACCAGGTCCTTAACGGGGCATAGATATATAGATGAGGATGATGACGATGGCCCCACGTGGGACTACATGATACTTGATGAGGGCCACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTTGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGTTGCTTGGCGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCTTCTGACAGAGACAAGCGTGTTGGTTCAGCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACAAACGAGAAATCATTGTGTGGCTTCGGTTGACCAATATTCAGCGACATCTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGATGAGGTTAATGTTGCAGAGAAATTGGCAATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTAAGGATGAGCACGATGTATCGTGCAAAATTACTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCATAACATCTAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAATCCAGCGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCTCCAATATTTCTGTTGACGTCTCAAGTTGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTCTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAAAAGAAAGAACAAACTCGATACTTTTGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGACAATTGGCTGAGAAACATGATTCTCAACATATAGTGGATGACTCTTTCCATGCACATATAGAGCTCCTGAAAAGTCAGGGCATAGCAGGAATTAGTCACCACAGTTTACTGTTTTCCAAGACCGAACCAGTTCAAGAAGCTCCTGAGCATGAAGTAACAAGGATTCATAATACTCAATATATTGGAACTTCGTCGTCGTCGTCATATTCACATGAGCGAATTGTTGACGGAGCTGCATTTGCTTTTAATCCTAAGGACGTTAATTTACATAAAAAAGACTCTTCTCCTAGCAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGACAGACTTGATCGGCTCTCCCAAATGCTCTCCAATACGGTGATGATTTCTAAATTACCTGACAAAGGAGAGAAACTTAAAAATCGGATTGTGGAGCTGAATCGAGAGCTTACTAAACTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACCGATGAATTTGAAAGGGTGGTAAATGTATAG	3162	0.4124	MANKSVKKPQSLNDSHYRFLQDLSAPPKTSSKPLADENDTPIQPRNLIYQDVDDDTIPQFSAITDFDSPIGQNSPENIEPVRVEEAPIRNEVPRFSDNCSLSQKYRESRQPSAVEEAPLSEFPQFFYDYSYSQNSRENRKPVKAVEPLSQNYAENHQPVKPVAPLSQNYAENRQPVKVKEALLPKEVVPQRVDNNSLKEEKNTKVKVQGRRRLCKAADKEAAKKVAVDEPKLDDLADFDSPIPVRKNVIEIEESKGKSQIRDILNDLTSRFDALSVEKKPQPKPVPKPVERFEGGKEIFEDEGLEFGSAGSSFSPKQDPHDTLSKDTKNDSGDIEYESDDESDDSVQVLDHFEPENDGSITLSDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIRRVLVVAPKTLLPHWIKELSAVGLSEKTREYFGSCAKLREYELQYILQDKGVLLTTYDIVRNNTRSLTGHRYIDEDDDDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKLLGDKKWFKDKYETPILRGNDKNASDRDKRVGSAIAKELRDHIQPYFLRQTRNHCVASVDQYSATSYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEVNVAEKLAMHIADVAETDKFKDEHDVSCKITFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDFLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPKEGFDVSVTQRQLAEKHDSQHIVDDSFHAHIELLKSQGIAGISHHSLLFSKTEPVQEAPEHEVTRIHNTQYIGTSSSSSYSHERIVDGAAFAFNPKDVNLHKKDSSPSSVGKLTELEIKDRLDRLSQMLSNTVMISKLPDKGEKLKNRIVELNRELTKLKMEQTNVVDLDDITDEFERVVNV	1053

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05229	1053	SMART	ultradead3	374	572	IPR014001	-
	Trre7g05229	1053	MobiDBLite	consensus disorder prediction	1	37	-	-
	Trre7g05229	1053	Gene3D	-	354	602	IPR038718	-
	Trre7g05229	1053	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	367	602	IPR027417	-
	Trre7g05229	1053	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	509	869	IPR027417	-
	Trre7g05229	1053	Gene3D	-	606	901	IPR027417	-
	Trre7g05229	1053	MobiDBLite	consensus disorder prediction	307	345	-	-
	Trre7g05229	1053	FunFam	Protein CHROMATIN REMODELING 24	358	620	-	-
	Trre7g05229	1053	MobiDBLite	consensus disorder prediction	1	46	-	-
	Trre7g05229	1053	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	706	865	IPR001650	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05229	Trre-Chr7	58746117	58753946	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05229	701	869	RAD5 or RAD16-like Gene Family	AT5G22750	34.320	1.01e-23	106

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Trre7g05229		SNF2_N	2.6e-29	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05229	K20093		-	gmx:100779283	1315.44

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