Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05229 ATGGCGAACAAGAGCGTGAAGAAACCACAGAGTCTCAACGATAGTCACTATCGCTTCCTTCAAGATCTCTCCGCTCCTCCCAAAACCTCTTCCAAACCACTCGCTGATGAAAACGATACTCCGATTCAACCTCGAAACCTCATCTACCAAGACGTTGATGATGATACCATTCCCCAGTTTTCTGCTATCACTGACTTCGATTCTCCGATCGGTCAAAATTCTCCCGAGAATATTGAACCAGTTAGGGTAGAAGAAGCTCCTATTCGTAACGAGGTTCCACGGTTTTCCGATAATTGTTCACTTAGTCAAAAATATCGGGAGAGTCGTCAACCAAGTGCCGTAGAAGAAGCTCCTCTTTCTGAGTTTCCACAGTTTTTTTATGATTATTCTTATAGTCAAAATTCTCGAGAGAATCGCAAACCAGTTAAGGCAGTAGAACCTCTTAGTCAAAATTATGCAGAGAATCACCAACCAGTTAAGCCAGTAGCTCCTCTAAGTCAAAATTATGCAGAGAATCGCCAACCAGTTAAGGTAAAAGAAGCTCTTCTTCCAAAGGAGGTGGTTCCACAGAGAGTTGATAATAATTCACTTAAGGAGGAAAAGAATACCAAGGTTAAGGTGCAAGGGCGCCGCCGCCTTTGCAAGGCTGCGGATAAAGAAGCTGCCAAAAAGGTGGCAGTTGATGAACCTAAGCTTGACGATCTTGCTGACTTCGATTCGCCTATTCCGGTGCGGAAAAATGTGATTGAGATTGAAGAAAGTAAGGGTAAGAGTCAAATTAGGGATATTTTGAATGACCTAACCTCCAGGTTTGATGCGCTATCGGTTGAGAAGAAGCCGCAGCCCAAACCGGTGCCAAAGCCTGTTGAGCGTTTTGAAGGAGGGAAAGAAATTTTTGAAGATGAGGGTTTGGAGTTTGGGAGTGCTGGATCTTCATTTTCTCCGAAACAGGATCCCCATGACACCTTATCAAAGGATACTAAGAATGATAGTGGTGATATTGAGTATGAATCAGATGATGAATCAGATGATTCGGTTCAGGTGTTGGATCACTTTGAGCCTGAGAATGATGGCTCTATAACATTGAGTGACCCACGGTCTACATATAAGTTGCAGCCTAAGATTGCGAAAATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTGGCTGGACTGTTTTATTCACGTTTAATTAGAAGGGTATTGGTTGTGGCCCCAAAAACACTATTGCCACATTGGATCAAAGAGTTATCGGCTGTTGGTCTATCTGAGAAGACAAGAGAATATTTTGGATCCTGTGCCAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACTTATGATATTGTCCGCAACAATACCAGGTCCTTAACGGGGCATAGATATATAGATGAGGATGATGACGATGGCCCCACGTGGGACTACATGATACTTGATGAGGGCCACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTTGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGTTGCTTGGCGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCTTCTGACAGAGACAAGCGTGTTGGTTCAGCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACAAACGAGAAATCATTGTGTGGCTTCGGTTGACCAATATTCAGCGACATCTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGATGAGGTTAATGTTGCAGAGAAATTGGCAATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTAAGGATGAGCACGATGTATCGTGCAAAATTACTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCATAACATCTAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAATCCAGCGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCTCCAATATTTCTGTTGACGTCTCAAGTTGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTCTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAAAAGAAAGAACAAACTCGATACTTTTGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGACAATTGGCTGAGAAACATGATTCTCAACATATAGTGGATGACTCTTTCCATGCACATATAGAGCTCCTGAAAAGTCAGGGCATAGCAGGAATTAGTCACCACAGTTTACTGTTTTCCAAGACCGAACCAGTTCAAGAAGCTCCTGAGCATGAAGTAACAAGGATTCATAATACTCAATATATTGGAACTTCGTCGTCGTCGTCATATTCACATGAGCGAATTGTTGACGGAGCTGCATTTGCTTTTAATCCTAAGGACGTTAATTTACATAAAAAAGACTCTTCTCCTAGCAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGACAGACTTGATCGGCTCTCCCAAATGCTCTCCAATACGGTGATGATTTCTAAATTACCTGACAAAGGAGAGAAACTTAAAAATCGGATTGTGGAGCTGAATCGAGAGCTTACTAAACTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACCGATGAATTTGAAAGGGTGGTAAATGTATAG 3162 0.4124 MANKSVKKPQSLNDSHYRFLQDLSAPPKTSSKPLADENDTPIQPRNLIYQDVDDDTIPQFSAITDFDSPIGQNSPENIEPVRVEEAPIRNEVPRFSDNCSLSQKYRESRQPSAVEEAPLSEFPQFFYDYSYSQNSRENRKPVKAVEPLSQNYAENHQPVKPVAPLSQNYAENRQPVKVKEALLPKEVVPQRVDNNSLKEEKNTKVKVQGRRRLCKAADKEAAKKVAVDEPKLDDLADFDSPIPVRKNVIEIEESKGKSQIRDILNDLTSRFDALSVEKKPQPKPVPKPVERFEGGKEIFEDEGLEFGSAGSSFSPKQDPHDTLSKDTKNDSGDIEYESDDESDDSVQVLDHFEPENDGSITLSDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIRRVLVVAPKTLLPHWIKELSAVGLSEKTREYFGSCAKLREYELQYILQDKGVLLTTYDIVRNNTRSLTGHRYIDEDDDDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKLLGDKKWFKDKYETPILRGNDKNASDRDKRVGSAIAKELRDHIQPYFLRQTRNHCVASVDQYSATSYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEVNVAEKLAMHIADVAETDKFKDEHDVSCKITFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDFLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPKEGFDVSVTQRQLAEKHDSQHIVDDSFHAHIELLKSQGIAGISHHSLLFSKTEPVQEAPEHEVTRIHNTQYIGTSSSSSYSHERIVDGAAFAFNPKDVNLHKKDSSPSSVGKLTELEIKDRLDRLSQMLSNTVMISKLPDKGEKLKNRIVELNRELTKLKMEQTNVVDLDDITDEFERVVNV 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05229 1053 SMART ultradead3 374 572 IPR014001 -
Trre7g05229 1053 MobiDBLite consensus disorder prediction 1 37 - -
Trre7g05229 1053 Gene3D - 354 602 IPR038718 -
Trre7g05229 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 602 IPR027417 -
Trre7g05229 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 869 IPR027417 -
Trre7g05229 1053 Gene3D - 606 901 IPR027417 -
Trre7g05229 1053 MobiDBLite consensus disorder prediction 307 345 - -
Trre7g05229 1053 FunFam Protein CHROMATIN REMODELING 24 358 620 - -
Trre7g05229 1053 MobiDBLite consensus disorder prediction 1 46 - -
Trre7g05229 1053 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 706 865 IPR001650 -
Trre7g05229 1053 PANTHER SNF2/RAD54 FAMILY MEMBER 198 1031 - -
Trre7g05229 1053 CDD SF2_C_SNF 695 826 - -
Trre7g05229 1053 Pfam Helicase conserved C-terminal domain 703 815 IPR001650 -
Trre7g05229 1053 MobiDBLite consensus disorder prediction 274 294 - -
Trre7g05229 1053 SMART helicmild6 732 815 IPR001650 -
Trre7g05229 1053 Coils Coil 1013 1033 - -
Trre7g05229 1053 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 565 IPR014001 -
Trre7g05229 1053 Pfam SNF2-related domain 396 651 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05229 Trre-Chr7 58746117 58753946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05229 701 869 RAD5 or RAD16-like Gene Family AT5G22750 34.320 1.01e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre7g05229 SNF2_N 2.6e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05229 K20093 - gmx:100779283 1315.44