Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05224 ATGGATGATGAGAGTCATAGTAGTTTGCCAAATGGATTCAGCACAGAAACTCCTGAAAATCATTGTTTAAAAACAAACACTACCAACAATAACAACAACAATAATCATCATCATAATAGCAATAAAGAACAAGACCGTTTTCTACCTATAGCAAATGTTGGTAGAATAATGAAAAAAGTTATTCCGGCAAATGGAAAAATCTCTAAGGACGCGAAAGAGACGGTACAAGAATGTGTGTCGGAGTTTATAAGTTTTGTCACGGGGGAAGCATCGGATAAATGTCAAAGAGAAAAAAGAAAGACGATTAATGGCGATGATATCATTTGGGCTATTACAACTTTAGGCTTTGAAGATTATGTGGAACCATTAAAATCTTACCTTCAAAAATATAGAGATATTGAAGGTGAGAAAGTTAATGTTCCAAAACAACAAAGATCTGAACAAAGGTTACATCATGATCAACATCATAACCAAGATGAGTTTAATAATCAACATTTCAACAATAGTGTATATACTTCAACAAATCTCATGTCTCAACCTTCTTATGTCACCAATGATCAACAATTTCCATTACCTTTCTCAACAAATTCAATTCAAAAACAGTTACGGCCGCAAGATCAGATTGATTCAATAGGTCGTTGGTATGAATGA 651 0.3349 MDDESHSSLPNGFSTETPENHCLKTNTTNNNNNNNHHHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHHDQHHNQDEFNNQHFNNSVYTSTNLMSQPSYVTNDQQFPLPFSTNSIQKQLRPQDQIDSIGRWYE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05224 216 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre7g05224 216 MobiDBLite consensus disorder prediction 7 37 - -
Trre7g05224 216 SUPERFAMILY Histone-fold 44 167 IPR009072 GO:0046982
Trre7g05224 216 Gene3D Histone, subunit A 34 170 IPR009072 GO:0046982
Trre7g05224 216 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Trre7g05224 216 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Trre7g05224 216 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Trre7g05224 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre7g05224 216 FunFam Nuclear transcription factor Y subunit B-3 36 161 - -
Trre7g05224 216 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Trre7g05224 216 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05224 Trre-Chr7 58719462 58720112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05224 42 211 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.778 1.21e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre7g05224 CBFD_NFYB_HMF 3.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05224 K08065 - gmx:100778216 325.865