Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05217 ATGCAACAAATGAAGATGCAAGGCTGTGAAGTTGAAGCCATTGGCATAAACTACAAAATCCACACAAACAAAGCAGAACACCCTTTTAAAATCTTCAGCAAATCTCCACAACTAGATAATGCCAATGGTCAAGAAATAGAAGAGGAAGAAGCAGGAGTTGAAAAAAGTTGCAGTGGAGTTAGGCATGTGCTCAAGAATGTGAGTTTTCAAGCCAGACCATGGGAAATCCTAGCAATTGTTGGGCCAAGTGGAGCTGGAAAGTCATCACTACTTGAGATCTTAGCAGTTGAAGAAACCATGATGTTCAGTGCAAAACTAAGGCTAAAGCTTCCTCAACAACAACTATGTTCAAGGGTCAAGTCATTGATTCAAGAGCTTGGACTTGATCATGTTGCGAGGACTCGAATTGGTGACGATCGAGTCCGAGGTATATCAGGCGGTGAAAGGCGCAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTTTTGATTCTTGATGAACCAACTTCAGGACTTGATAGTACTTCAGCTTTGCAAATAATTGATATGCTCAAGGTTATGGCTGAAACTAGGGGAAGAACTATAATACTAAGTATTCACCAACCTGGTTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCTAATGGTTCTGTGCTTCATCATGGAACTGCTGAATTACTGAGTTTGAATTTGAGATTGATGGGTCTAGAGCTTCCACTACATGTTAATTTAGTCGAATTTGCTATTGATTCCATTGATATCATTCAACAACAACAGCAGCAACAATGTCAGGTGGAAACCGAACCGCCGAGACGATTGTTAGGAACAGTGCAACAGAAGAAAGGTGGTGATGATGAACAACAACAATCAGGTGAGAGTAAAAGTGGTAAGTTCACTTTGCAACAGCTATTTCAACAATCTAAAGTAATTGATGAAGATATCATCAATAGTACTGGAATGGATTTCTCTTATGATTTTGCAAATTCTAGATTGAGTGAAACTATGATTCTAACTCATAGATTCTCCAAAAACATATTTCGTACAAAAGAGCTATTTGCATGTAGGACAATTCAGATGCTGATTTCAGGACTAGTTTTAGGATCAATCTTTTGTAACCTCAAAGATGATATAAGAGGAACACAAGAAAGGATTGGTCTATTTGCTTTCATATTAACTTTTCTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTACAAGAAAGAGAGATTCTAATGAAAGAAACATCTTGTGGGAGCTACCGGGTATCGTCTTATGCTATTGCAAATGGCTTAGTTTACTTGCCATTTCTTCTAATCCTGGCCGTTTTGTTCACAGTTCCATTATACTGGCTGGTTGGTCTCAACAGAAACTTCACTGCTTTTTTGCACTTTCTGTTACTGATATGGCTTGTTCTTTATACAGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTTGTGCCTAATTTCATTGTTGGGAATTCAGTAATTAATGGTGTTATAGGTTCTTTCTTCTTATTCTCTGGTTACTTCATATCAAACCATGAGATTCCTAGTTACTGGATTTTCATGCATTATATATCACTTTTTAAGTATCCCTTTGAAGGGTTTCTGATCAATGAGTTCTCCAACTCAAAAAAGTGTTTGGAGTACATGTTTGGTGCATGTGTGATGAAGGGAGAGGATGTGCTTAAAGAAGCAGGGTTTGGAGGAGAAAGAAGTAGATGGAAGAATGTTGGTGTCACTGTTTGCTTCATCATGTTTTACAGATTTATTTCTTATGTTATTCTAAGATACAAATGTTCACAGAGAGGGATTAACAGTGGTAATTCTGTCATTGCATAA 1860 0.3769 MQQMKMQGCEVEAIGINYKIHTNKAEHPFKIFSKSPQLDNANGQEIEEEEAGVEKSCSGVRHVLKNVSFQARPWEILAIVGPSGAGKSSLLEILAVEETMMFSAKLRLKLPQQQLCSRVKSLIQELGLDHVARTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLSLNLRLMGLELPLHVNLVEFAIDSIDIIQQQQQQQCQVETEPPRRLLGTVQQKKGGDDEQQQSGESKSGKFTLQQLFQQSKVIDEDIINSTGMDFSYDFANSRLSETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDDIRGTQERIGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAVLFTVPLYWLVGLNRNFTAFLHFLLLIWLVLYTANSVVVCFSALVPNFIVGNSVINGVIGSFFLFSGYFISNHEIPSYWIFMHYISLFKYPFEGFLINEFSNSKKCLEYMFGACVMKGEDVLKEAGFGGERSRWKNVGVTVCFIMFYRFISYVILRYKCSQRGINSGNSVIA 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05217 619 Pfam ABC-2 type transporter 339 547 IPR013525 GO:0016020|GO:0140359
Trre7g05217 619 Pfam ABC transporter 64 98 IPR003439 GO:0005524
Trre7g05217 619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 245 IPR003439 GO:0005524
Trre7g05217 619 Gene3D - 98 274 IPR027417 -
Trre7g05217 619 Pfam ABC transporter 117 172 IPR003439 GO:0005524
Trre7g05217 619 ProSitePatterns ABC transporters family signature. 144 158 IPR017871 GO:0005524|GO:0016887
Trre7g05217 619 Gene3D - 16 97 IPR027417 -
Trre7g05217 619 SMART AAA_5 73 251 IPR003593 GO:0016887
Trre7g05217 619 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 94 597 - -
Trre7g05217 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 235 IPR027417 -
Trre7g05217 619 MobiDBLite consensus disorder prediction 281 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05217 Trre-Chr7 58672105 58674084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05217 29 232 Calmodulin-binding Proteins AT2G36910 24.335 5.76e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05217 K05681 - gmx:100789722 959.903