Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05213 ATGATGGGGAGTGAAAGTAGTGTAAATCTTCCTCCTGGGTTTTATTTTTGTCCAACGGATGAAGAACTAGTCCTTCACTTTCTATATTCCAAGGCTTCTTTACCATATCATCCTAACATCATACCTGAACTTTACTTATCTCACTTTGATCCTTGGGAAATATACGGTAAATCGTTGTCAAGTGGAAATGAACACTACTTTTTCACCGAAGTGAATGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAATTTGGGAATGAAGAAATACCTTGTGTTCATCCTTGGGAAAGGAACTGAAACCAATTGGGTAATGGAAGAGTATCATATTTCCTCATATGAATCTAGGAGAGGTCAAAATCAGCAGGATGAGAGTTGGAGCAAATGGGTTTTATGCAAAGTTTATGAAAAGAAGATGTCACAACAAGGTTCAAGTTATAATGATGAGGACATTGATGATAATGGAACAGAGGTATCATGGCTAGATGAAGTTTTTATGTCCTTAGATGATGATGATATTGATCAAACAACTCTACCTAATTAG 570 0.3579 MMGSESSVNLPPGFYFCPTDEELVLHFLYSKASLPYHPNIIPELYLSHFDPWEIYGKSLSSGNEHYFFTEVNENRSTENGYWKEIGVTKPINNLGMKKYLVFILGKGTETNWVMEEYHISSYESRRGQNQQDESWSKWVLCKVYEKKMSQQGSSYNDEDIDDNGTEVSWLDEVFMSLDDDDIDQTTLPN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05213 189 ProSiteProfiles NAC domain profile. 10 146 IPR003441 GO:0003677|GO:0006355
Trre7g05213 189 PANTHER NAC TRANSCRIPTION FACTOR 56 10 156 - -
Trre7g05213 189 SUPERFAMILY NAC domain 6 146 IPR036093 GO:0003677|GO:0006355
Trre7g05213 189 Pfam No apical meristem (NAM) protein 11 119 IPR003441 GO:0003677|GO:0006355
Trre7g05213 189 Gene3D NAC domain 19 150 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05213 Trre-Chr7 58646353 58647800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05213 1 147 NAC Transcription Factor Family AT1G77450 41.358 1.19e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre7g05213 NAM 7.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05213 - - mtr:11435699 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05213 7 58646353 58647800 Trre7g05213 7 58646353 58647800 ECH