Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05212 ATGATGGGGAGTGAAAGTAGTGTAAATCTTCCTCCTGGGTTTTATTTTTGTCCAACGGATGAAGAACTAGTCCTTCACTTTCTATATTCCAAGGCTTCTTTACCATATCATCCTAACATCATACCTGAACTTTACTTATCTCACTTTGATCCTTGGGAAATATACGGTAAATCGTTGTCAAGTGGAAATGAACACTACTTTTTCACCGAAGTGAATGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAATTTGGGAATGAAGAAATACCTTGTGTTCATCCTTGGGAAAGGAACTGAAACCAATTGGGTAATGGAAGAGTATCATATTTCCTCATATGAATCTAGGAGAGGTCAAAATCAGGATGAGAGTTGGAGCAAATGGGTTTTATGCAAAGTTTATGAAAAGAAGATGTCACAACAAGGTTCAAGTTATAATGATGAGGACATTGATGATAATGGAACAGAGGTATCATGGCTAGATGAAGTTTTTATGTCCTTAGATGATGATGATATTGATCAAACAACTCTACCTAATTAG 567 0.3563 MMGSESSVNLPPGFYFCPTDEELVLHFLYSKASLPYHPNIIPELYLSHFDPWEIYGKSLSSGNEHYFFTEVNENRSTENGYWKEIGVTKPINNLGMKKYLVFILGKGTETNWVMEEYHISSYESRRGQNQDESWSKWVLCKVYEKKMSQQGSSYNDEDIDDNGTEVSWLDEVFMSLDDDDIDQTTLPN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05212 188 Gene3D NAC domain 19 149 IPR036093 GO:0003677|GO:0006355
Trre7g05212 188 SUPERFAMILY NAC domain 6 145 IPR036093 GO:0003677|GO:0006355
Trre7g05212 188 Pfam No apical meristem (NAM) protein 11 119 IPR003441 GO:0003677|GO:0006355
Trre7g05212 188 PANTHER NAC TRANSCRIPTION FACTOR 56 10 155 - -
Trre7g05212 188 ProSiteProfiles NAC domain profile. 10 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05212 Trre-Chr7 58646353 58647800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05212 1 146 NAC Transcription Factor Family AT1G77450 40.994 4.84e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre7g05212 NAM 7.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05212 - - mtr:11435699 329.717