Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05199 ATGGCTATAACGAATATGATTCCGGGATTTCGATTCCATCCTACTGGAGTTGAATTGATGAAATACTTTCTGAAAAGGAAAGTAATGGGAAAAAAGTTTCATAATAATGTCATTGCTGAACTTGACATATACAAATATGCTCCTTGGGATCTCCCAGATAAATCTTATTTACAAAATGGGGATTTAGAATGGTACTTCTTCTGCCCGATTGAGAAGAAGTATGGAAGTGGGGGGAGGTTGAATCGAGCTACGGAAATTGGGTTTTGGAAAGCTACTGGTAAGGATAGAGCTGTGCAACATAAGAATCAAACAGTTGGGATGATAAAAACCTTGATATTTCACACTGGAAAAGCTCCTCGTGGTGATCGAACCGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTGGCTGACAGAGGAATTGTTCAGGATTCCTATGTAATCTGTAAAGTGTTTCAAAAGGAAGGTCCTGGTCCCAGAAATGGTGCACAATATGGGAGGCCATTTAATGAGGAAGACTGGAGTGATGATGAAGTTGGATTACCTTTTGCTGGATCGGCTGTGCTAGCTCCCAGTTTGGCTGTGGCAACTAATAGTTCTGTTCTAAATGACCAAAATATTTATGCTAGTGAATATGGTTCAATATCCACGCCATGTCAATTAAGATCGACGCCTTCTCCCTACCCAACAAATTCCTGTCAAACAGGATTAGAGCTTTCTCCCGACGCTGTCTATTCATGTCAAACAGGATTGATGTCTTCTCCTGATGCTATGAGATCATGTCAAACAGGATTGATACCGTCTCCTGATCCTGCGAGTTCATGTCAAACGGGATTGATACCTTCTCCCGACCCTGCGAATTCATGTCAAATGGGATTGATGCTGCCTTCTCCCGACCCTGTGAATTCATGTCAAACAGGATCAATGCATTCTCTCGATCCTGCAACTTCATGTCAAACAGGATCAATGCTTTCTCTCGATCCTGCAACTTCATGTCAAACGGCATCAATGCCTTCTCCCGACCCTGCTAATTCATGTCAAACAGGATCAATGCCTTCTCCCCACCCTGCAAATCATTCAGACAATCAAGCTGTTACTAATGATGATATTTTATCAATGCTTGATATTTTCAAAGACAACGACATATTTCCTGAGGAAAATATTGCTGAAGGTGCACTTTTAAATAACTTTTTTGAGGGTTTGGGAGATCTGGACTGTTCGGCGTTGGGATCCTTTGGCCAGAATGCTGAGGTTAGCACAAACGGAATGGCTACTACGGGTGATGTTGGGAGTGACGACTTAGATTTCTTTGAGTTGACTGATCTAGACTCTGAGTTGTTCTGGCAGAGTACTACACAACCTGGAAGCTGGAGTCAAAAGAAATAA 1392 0.421 MAITNMIPGFRFHPTGVELMKYFLKRKVMGKKFHNNVIAELDIYKYAPWDLPDKSYLQNGDLEWYFFCPIEKKYGSGGRLNRATEIGFWKATGKDRAVQHKNQTVGMIKTLIFHTGKAPRGDRTDWVMHEYRLEDKDLADRGIVQDSYVICKVFQKEGPGPRNGAQYGRPFNEEDWSDDEVGLPFAGSAVLAPSLAVATNSSVLNDQNIYASEYGSISTPCQLRSTPSPYPTNSCQTGLELSPDAVYSCQTGLMSSPDAMRSCQTGLIPSPDPASSCQTGLIPSPDPANSCQMGLMLPSPDPVNSCQTGSMHSLDPATSCQTGSMLSLDPATSCQTASMPSPDPANSCQTGSMPSPHPANHSDNQAVTNDDILSMLDIFKDNDIFPEENIAEGALLNNFFEGLGDLDCSALGSFGQNAEVSTNGMATTGDVGSDDLDFFELTDLDSELFWQSTTQPGSWSQKK 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05199 463 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 290 - -
Trre7g05199 463 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre7g05199 463 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Trre7g05199 463 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Trre7g05199 463 FunFam Nac domain-containing protein 86 15 159 - -
Trre7g05199 463 MobiDBLite consensus disorder prediction 331 365 - -
Trre7g05199 463 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05199 Trre-Chr7 58553031 58555382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05199 1 180 NAC Transcription Factor Family AT5G64060 65.556 5.19e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre7g05199 NAM 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05199 - - mtr:11427573 674.855