Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05192 ATGGAAACATATTCTGATCTAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACATGTTTATTTGTGAGGTATGCAACAAAGGATTCCAAAGAGAGCAAAACCTACAGCTACACATAAGAGGACACAATTTGCCTTGGAAGCCTAAGCAGAAGACTACAAAAGAGCCTAAGAGAAAGGGTTATCTGTGTCTTGAGCCTAGAGTAGTTAGAGACTTTAGCCGAAGTTAA 237 0.4051 METYSDLEVIALSPKTLMATNMFICEVCNKGFQREQNLQLHIRGHNLPWKPKQKTTKEPKRKGYLCLEPRVVRDFSRS 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05192 78 SMART c2h2final6 23 45 IPR013087 -
Trre7g05192 78 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Trre7g05192 78 Gene3D Classic Zinc Finger 3 73 - -
Trre7g05192 78 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Trre7g05192 78 Pfam Zinc-finger double-stranded RNA-binding 23 45 IPR022755 -
Trre7g05192 78 SUPERFAMILY beta-beta-alpha zinc fingers 23 45 IPR036236 -
Trre7g05192 78 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 76 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05192 Trre-Chr7 58522365 58522886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05192 5 78 IDZ Gene Family AT2G02070 81.333 2.99e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g05192 zf-C2H2_jaz 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05192 K25870 - cave:132189417 125.561