Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05179 ATGGAAAATAACCAAATTAATAATAGTAGTAGTAGTGCATTCACAAGCACTTGGAATCTTGAGAAAATGGAAACAAATGAACAAAACCGTATCATTCTCCAACAAGATCATCATCAAATTCCTATGAGTTCTTCTTTGATTTGGCCACAAATTAACTACAACAACATGATGATACCACCACCACCATCTTCATCTGGTTCTCTAAGTGACATATTAGGGATCCACCAAATTGATCAAGATGTTGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGATCCAGCAACTATTCGAAAACCAAAGCGAAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATTAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAATTCTTGAAGAGACAAATTAGGTTGCTTCAATCCACTCCTCAAAATCATCAACAACAACAAAATCACTTACCATTTTCATCACAATGCATTAATTCTACTCCTCCAAGTGCTTTATTATTGTCCCCTTCCGGTTGCGACGCTTGGCCTTTTGCACCGAATTTACTACTCACTTCCACAACATCCACGACGGTCGACTTGCCTGCCGGAGTTCAATTTGACGCCGGAGGACACTCTCATTCACATGCTTGTGATGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTAA 798 0.3947 MENNQINNSSSSAFTSTWNLEKMETNEQNRIILQQDHHQIPMSSSLIWPQINYNNMMIPPPPSSSGSLSDILGIHQIDQDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQNHQQQQNHLPFSSQCINSTPPSALLLSPSGCDAWPFAPNLLLTSTTSTTVDLPAGVQFDAGGHSHSHACDGSSSFNHHEVISE 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05179 265 CDD bHLH_AtIND_like 122 179 - -
Trre7g05179 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Trre7g05179 265 FunFam BHLH transcription factor 124 188 - -
Trre7g05179 265 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 201 IPR045843 GO:0003700|GO:0006355
Trre7g05179 265 Coils Coil 74 94 - -
Trre7g05179 265 Gene3D - 124 192 IPR036638 GO:0046983
Trre7g05179 265 Pfam Helix-loop-helix DNA-binding domain 131 170 IPR011598 GO:0046983
Trre7g05179 265 SMART finulus 127 176 IPR011598 GO:0046983
Trre7g05179 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 191 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05179 Trre-Chr7 58365879 58366676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05179 90 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 83.146 8.39e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g05179 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05179 - - psat:127102813 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05179 7 58365879 58366676 Trre7g05179 7 58365879 58366676 ECH