Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05177 ATGAGTGGAAGTGGCAGAAAGCTATCTTCAAACTGGGATTCAAGAGATGAACCTGAGTTTGCATCTGAGAGTGTTACTAATAGCAATAGTTCAAGGTATTCAGAAAGAAATGATATGCTAAATTCCAGAATGGGATTTTCACGAACGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGATGATGTTAGGAGCGGAGACTACAAAGTTTTGGATGCTACAATTGCACAAGATACTGATGGAAGTTACAATATGAAAACGTCTCCAGGGTTTGAGGAATGGAAAAATAGGAAGCATAGTCAATATTCAAAAAATGATTACGGCAGGAGAAGTAGGAGCCGGAGCCCTTCACGTGGTTTTAGGTATTCAGATGTCGATGATAGGAACAGAATGAGGGCTGGCAGATCGACAAAACCTTGTAGAGATTTTGCTGTTGGGAACTGTAGAAGAGGCAGCACTTGTCATTTCCTTCACCATGATAACCAGAGTTATGAGGAAAGCAGGGAAAGTAGACACAGGCAAGATGGACCCAGATATTCTAATCCCCGTGAGAGTGGGGATTATTCTCTTACAAATCGACGATCTAATGAAGCTTGTATTAATTTTGAAATGGGAAGGTGTAGAACGGGAGAATCATGCAGGTATGTCCATCATGGCAAATCTGATGGGTTTGATAAAGTTTCCGCATATGAATCATCTAGGGAAAGGGAAGTTGATAGAAGACACATGGATAGTTCATTCAAGCAGGGTGGTCAACATTATCCAAACCACAAGAGTAATATTCCTTGCAAATATTTTGCTCTTGGAAATTGTCTTTACGGTAAAGATTGTAGGTTTTCTCATGATAGACAGTCATCTACTAGCCCTAGATTAAGGGATGATAGATCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGATAGACAAAAAATGAGCGATTCAGTTACTCCTAATGGAAGGCCAAGCGGCGACAGATGGGTTTCAGATGGCAGTATGGCTGAGGTAGATAAAGTTTGGGATGGTCCAAAGCAAAATGATTTAGTCGCTGTCTCTGATACAACACAGCTGGTTGAGGACAAAAATAATGGAATTACAGGCGCCCCTGGATTCATGACTTGGCCAATGAATGATGGATTGGATCATAGCTTAAACCAGAACAGAGTGCATAATGAATTGCCATTTTCAATTGATAAGAAGGAAGCCAACTGTCGGACAGAAGAAAATGCAGTTGACAACATTCTCCTTTCTCAGTCACTAGGTGGAGGCATTTGGCCCGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGTGCGAGATCTTCCAGCCATATTAAAGATGAGGATGGGCATAATAAGCATCAAGTTGCTCCAGGTCAAGGACTAAATCAGAATGCTCAGAACATGACTGCTTCCTACGTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGAGCAAGAATTATTGAAGGTACACAGAACCAGGAACTCTACACTGAGAAAAACTACATTGTAGAACCAAATATCACGAATGCAAGCCTATCACAGACCAGTTCAGTAATTACTCCAACTCCGAACATTGTCAGCAAAGAACAACTTGCTCAACTTAGCTGCCTCTCGGCCTCTCTCGCACATATCCTTGGAACAGATCAGCGGCTTTCACAACTTCATTCTACTTTAAAGTCTTGTGATGCAAAGGACACTCTCTTCGTAAACAAAATTGAAGGGTCTAGTAATCCTCTTTCCATGACATTCATCAAACCTGATCCTGCTATTGGATTGAAGCAGTATGATCCAATGTGTGATAGTATAGAGCCCACGAGTATCAATGCAAGTGGGGTCTCTCCAACCTTTTCTCCTAGTATAAATGTTGCTAAAAATCCAGTGGTAATTCCACCACCGTTATCTAACCTGGGACAAAATTTTGACGATTCTCGTAAAAAGGAAACTAACAAAATGGTAGCTGAAGTAAAGCCAAGCTCTCAAGCTGAAAATAAAATTACAGAAGAGAATAGTCCTTTGGAAAACATGGACCAAGATGATGGACCTGATGAGGGCAAGAAAACAAAGGATGTAAAGGGGATTCGTGCATTTAAATTTTCATTGGTAGAGCTCACTAAGGAGATTTTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGAGAAAGTAACCGGTACAGTACAGCAGGTACATATTCCTCAGACACAAGAGAAAATTGAACGCTACTTATCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2337 0.4074 MSGSGRKLSSNWDSRDEPEFASESVTNSNSSRYSERNDMLNSRMGFSRTEPFSGGRGSNKDDVRSGDYKVLDATIAQDTDGSYNMKTSPGFEEWKNRKHSQYSKNDYGRRSRSRSPSRGFRYSDVDDRNRMRAGRSTKPCRDFAVGNCRRGSTCHFLHHDNQSYEESRESRHRQDGPRYSNPRESGDYSLTNRRSNEACINFEMGRCRTGESCRYVHHGKSDGFDKVSAYESSREREVDRRHMDSSFKQGGQHYPNHKSNIPCKYFALGNCLYGKDCRFSHDRQSSTSPRLRDDRSRSNQGEDQVLDRQKMSDSVTPNGRPSGDRWVSDGSMAEVDKVWDGPKQNDLVAVSDTTQLVEDKNNGITGAPGFMTWPMNDGLDHSLNQNRVHNELPFSIDKKEANCRTEENAVDNILLSQSLGGGIWPGDEKMSPDWNYGARSSSHIKDEDGHNKHQVAPGQGLNQNAQNMTASYVVGQSQATVSIVPPRARIIEGTQNQELYTEKNYIVEPNITNASLSQTSSVITPTPNIVSKEQLAQLSCLSASLAHILGTDQRLSQLHSTLKSCDAKDTLFVNKIEGSSNPLSMTFIKPDPAIGLKQYDPMCDSIEPTSINASGVSPTFSPSINVAKNPVVIPPPLSNLGQNFDDSRKKETNKMVAEVKPSSQAENKITEENSPLENMDQDDGPDEGKKTKDVKGIRAFKFSLVELTKEILKPTWKDGKITKEDYKAIVKKVTEKVTGTVQQVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKVQKA 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05177 778 SMART c3hfinal6 258 283 IPR000571 GO:0046872
Trre7g05177 778 SMART c3hfinal6 194 219 IPR000571 GO:0046872
Trre7g05177 778 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Trre7g05177 778 MobiDBLite consensus disorder prediction 281 309 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 657 674 - -
Trre7g05177 778 Gene3D - 235 293 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 161 180 - -
Trre7g05177 778 Gene3D - 130 233 - -
Trre7g05177 778 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Trre7g05177 778 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 777 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 21 54 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 228 254 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 637 692 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 1 65 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 161 190 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 281 330 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 228 247 - -
Trre7g05177 778 MobiDBLite consensus disorder prediction 80 134 - -
Trre7g05177 778 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 159 IPR000571 GO:0046872
Trre7g05177 778 ProSiteProfiles Zinc finger C3H1-type profile. 193 221 IPR000571 GO:0046872
Trre7g05177 778 Pfam CCCH-type zinc finger 262 282 IPR041367 -
Trre7g05177 778 ProSiteProfiles Zinc finger C3H1-type profile. 258 284 IPR000571 GO:0046872
Trre7g05177 778 MobiDBLite consensus disorder prediction 91 134 - -
Trre7g05177 778 Pfam RNA-binding, Nab2-type zinc finger 198 217 - -
Trre7g05177 778 SUPERFAMILY CCCH zinc finger 258 282 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05177 Trre-Chr7 58343813 58348801 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre7g05177 zf-CCCH 1.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05177 - K22909 gmx:100783856 825.469