Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05176 ATGAGTGGAAGTGGCAGAAAGCTATCTTCAAACTGGGATTCAAGAGATGAACCTGAGTTTGCATCTGAGAGTGTTACTAATAGCAATAGTTCAAGGTATTCAGAAAGAAATGATATGCTAAATTCCAGAATGGGATTTTCACGAACGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGATGATGTTAGGAGCGGAGACTACAAAGTTTTGGATGCTACAATTGCACAAGATACTGATGGAAGTTACAATATGAAAACGTCTCCAGGGTTTGAGGAATGGAAAAATAGGAAGCATAGTCAATATTCAAAAAATGATTACGGCAGGTCAGTCAAGAGAAGTAGGAGCCGGAGCCCTTCACGTGGTTTTAGGTATTCAGATGTCGATGATAGGAACAGAATGAGGGCTGGCAGATCGACAAAACCTTGTAGAGATTTTGCTGTTGGGAACTGTAGAAGAGGCAGCACTTGTCATTTCCTTCACCATGATAACCAGAGTTATGAGGAAAGCAGGGAAAGTAGACACAGGCAAGATGGACCCAGATATTCTAATCCCCGTGAGAGTGGGGATTATTCTCTTACAAATCGACGATCTAATGAAGCTTGTATTAATTTTGAAATGGGAAGGTGTAGAACGGGAGAATCATGCAGGTATGTCCATCATGGCAAATCTGATGGGTTTGATAAAGTTTCCGCATATGAATCATCTAGGGAAAGGGAAGTTGATAGAAGACACATGGATAGTTCATTCAAGCAGGGTGGTCAACATTATCCAAACCACAAGAGTAATATTCCTTGCAAATATTTTGCTCTTGGAAATTGTCTTTACGGTAAAGATTGTAGGTTTTCTCATGATAGACAGTCATCTACTAGCCCTAGATTAAGGGATGATAGATCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGATAGACAAAAAATGAGCGATTCAGTTACTCCTAATGGAAGGCCAAGCGGCGACAGATGGGTTTCAGATGGCAGTATGGCTGAGGTAGATAAAGTTTGGGATGGTCCAAAGCAAAATGATTTAGTCGCTGTCTCTGATACAACACAGCTGGTTGAGGACAAAAATAATGGAATTACAGGCGCCCCTGGATTCATGACTTGGCCAATGAATGATGGATTGGATCATAGCTTAAACCAGAACAGAGTGCATAATGAATTGCCATTTTCAATTGATAAGAAGGAAGCCAACTGTCGGACAGAAGAAAATGCAGTTGACAACATTCTCCTTTCTCAGTCACTAGGTGGAGGCATTTGGCCCGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGTGCGAGATCTTCCAGCCATATTAAAGATGAGGATGGGCATAATAAGCATCAAGTTGCTCCAGGTCAAGGACTAAATCAGAATGCTCAGAACATGACTGCTTCCTACGTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGAGCAAGAATTATTGAAGGTACACAGAACCAGGAACTCTACACTGAGAAAAACTACATTGTAGAACCAAATATCACGAATGCAAGCCTATCACAGACCAGTTCAGTAATTACTCCAACTCCGAACATTGTCAGCAAAGAACAACTTGCTCAACTTAGCTGCCTCTCGGCCTCTCTCGCACATATCCTTGGAACAGATCAGCGGCTTTCACAACTTCATTCTACTTTAAAGTCTTGTGATGCAAAGGACACTCTCTTCGTAAACAAAATTGAAGGGTCTAGTAATCCTCTTTCCATGACATTCATCAAACCTGATCCTGCTATTGGATTGAAGCAGTATGATCCAATGTGTGATAGTATAGAGCCCACGAGTATCAATGCAAGTGGGGTCTCTCCAACCTTTTCTCCTAGTATAAATGTTGCTAAAAATCCAGTGGTAATTCCACCACCGTTATCTAACCTGGGACAAAATTTTGACGATTCTCGTAAAAAGGAAACTAACAAAATGGTAGCTGAAGTAAAGCCAAGCTCTCAAGCTGAAAATAAAATTACAGAAGAGAATAGTCCTTTGGAAAACATGGACCAAGATGATGGACCTGATGAGGGCAAGAAAACAAAGGATGTAAAGGGGATTCGTGCATTTAAATTTTCATTGGTAGAGCTCACTAAGGAGATTTTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGAGAAAGTAACCGGTACAGTACAGCAGGTACATATTCCTCAGACACAAGAGAAAATTGAACGCTACTTATCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2346 0.4075 MSGSGRKLSSNWDSRDEPEFASESVTNSNSSRYSERNDMLNSRMGFSRTEPFSGGRGSNKDDVRSGDYKVLDATIAQDTDGSYNMKTSPGFEEWKNRKHSQYSKNDYGRSVKRSRSRSPSRGFRYSDVDDRNRMRAGRSTKPCRDFAVGNCRRGSTCHFLHHDNQSYEESRESRHRQDGPRYSNPRESGDYSLTNRRSNEACINFEMGRCRTGESCRYVHHGKSDGFDKVSAYESSREREVDRRHMDSSFKQGGQHYPNHKSNIPCKYFALGNCLYGKDCRFSHDRQSSTSPRLRDDRSRSNQGEDQVLDRQKMSDSVTPNGRPSGDRWVSDGSMAEVDKVWDGPKQNDLVAVSDTTQLVEDKNNGITGAPGFMTWPMNDGLDHSLNQNRVHNELPFSIDKKEANCRTEENAVDNILLSQSLGGGIWPGDEKMSPDWNYGARSSSHIKDEDGHNKHQVAPGQGLNQNAQNMTASYVVGQSQATVSIVPPRARIIEGTQNQELYTEKNYIVEPNITNASLSQTSSVITPTPNIVSKEQLAQLSCLSASLAHILGTDQRLSQLHSTLKSCDAKDTLFVNKIEGSSNPLSMTFIKPDPAIGLKQYDPMCDSIEPTSINASGVSPTFSPSINVAKNPVVIPPPLSNLGQNFDDSRKKETNKMVAEVKPSSQAENKITEENSPLENMDQDDGPDEGKKTKDVKGIRAFKFSLVELTKEILKPTWKDGKITKEDYKAIVKKVTEKVTGTVQQVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKVQKA 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05176 781 Pfam RNA-binding, Nab2-type zinc finger 201 220 - -
Trre7g05176 781 Gene3D - 133 236 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 232 257 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 232 250 - -
Trre7g05176 781 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Trre7g05176 781 MobiDBLite consensus disorder prediction 284 312 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 80 137 - -
Trre7g05176 781 Gene3D - 238 296 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 660 677 - -
Trre7g05176 781 ProSiteProfiles Zinc finger C3H1-type profile. 261 287 IPR000571 GO:0046872
Trre7g05176 781 MobiDBLite consensus disorder prediction 21 54 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 91 113 - -
Trre7g05176 781 SMART c3hfinal6 197 222 IPR000571 GO:0046872
Trre7g05176 781 SMART c3hfinal6 261 286 IPR000571 GO:0046872
Trre7g05176 781 SMART c3hfinal6 137 163 IPR000571 GO:0046872
Trre7g05176 781 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 780 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 164 183 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 1 65 - -
Trre7g05176 781 Pfam CCCH-type zinc finger 265 285 IPR041367 -
Trre7g05176 781 MobiDBLite consensus disorder prediction 120 137 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 640 695 - -
Trre7g05176 781 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Trre7g05176 781 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872
Trre7g05176 781 MobiDBLite consensus disorder prediction 164 193 - -
Trre7g05176 781 MobiDBLite consensus disorder prediction 284 333 - -
Trre7g05176 781 SUPERFAMILY CCCH zinc finger 261 285 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05176 Trre-Chr7 58343813 58348801 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre7g05176 zf-CCCH 1.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05176 - K22909 gmx:100783856 830.091