Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05175 ATGGCTTCTTCTCTCTTCACTTTCTCTCTTTTTCTTTTCTTCACACTTTCCTCCGCCTCTAACCACCATCATCATCATTCACCCACTCCCGCCCCCACCGTCTCTCATTCCACCGTATCGGAGATCCAACAAGCCTGTAAAGCAACTCGTTTCCCACAACAATGCGAATCCTCTCTCACAAATCTCACTACAAGTCCCACCACTCTCCAGCTCCTCCAATCCGCCATTTCTCACTCATCGGAAAATCTCGTAACCGCTCTATCCATGGTTAAGGAAATTCAAAAAACCTCTAAAGATAGCCAGAACCGTACCGTCGCATCCACCACCTGCATCGAAACCCTCACAAATTCTCAACACCGTATTTCCACCGCAAACGACGCATTAGAACGTGGAAAAATCAAAGACGCCAGAGCGTGGCTGAGCGCTGCTCTCGCTTATCAATACGATTGCTGGAGCGGACTCAAATACGCAAACGACACACACGCCGTCGGTGAAGCGATGGCGTTTATCGATTCTCTCACAATGCTCTCAAGCAACGCTCTCTCCATGGCGTTTTCGTACGATGTTTACGGAAACGACACGTCGGCGTGGAAGCCACCAACCACCGAGCGCGACGGTTTATGGCAAACGTCTGGATCGGGTGGAGGATCTGGCTTTCAGGGAGAGATTCCGTTGAATTTGAAGGCAGACGTTACGGTTTGTAAGGGAGGGGGTAAGGAATGTTATAAGACGGTGCAGGAAGCGGTTAACGCTGCGCCGGATAACGGTGTTGGCGGGAAGAGATTTGTTATATACATAAAAGAAGGGATTTATGAAGAAACCGTTAGGGTTCCGTTAGAAAAGAGAAATGTGGTGTTCTTGGGTGACGGAATCGGAAAGACGGTTATTACCGGGTCAGCTAACGTGGGGCAGCCCGGAATGACTACTTACAACTCCGCCACAGTCGCTGTTCTTGGCGATGGATTTATGGCAAAGGATCTAACAATAGAAAACACAGCAGGACCTGATGCACACCAAGCAGTGGCATTCAGATTAGACAGTGATCTTTCTGTAATTGAGAATTGTGAATTCTTAGGTAACCAAGATACTCTTTATGCTCATTCCCTTCGCCAATTCTACAAATCATGCCGCATTGAAGGCAACGTCGATTTCATCTTTGGAAACTCAGCTGCAATCTTCCAAGACTGTCAAGTCCTTGTTCGTCCTAGACAACTCAAGCCAGAGCATGGCGAGAACAATGCCATCACAGCTCATGGTAGAACCGACCCTGCACAAACTACAGGGTTTGTTTTTCAAAACTGTTTGATTAATGGAACTGAAGATTACATGGCATTGTATCATAGTAAACCTAAAGTGCATAAAAACTATTTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTATATTAATTCGACATTGGAAGAACTTATTACACCTGAGGGTTGGATGCCTTGGAATGGTGACTTTGCACTTAAGACACTTTACTATGGTGAATTTGAGAATTCTGGTGCTGGTTCTGATTTGTCTCAAAGGGTGTCTTGGAGTAGTAAAATCCCTGCTGAACATGTGGTCAGTTATTCAGTGGAGAATTTCATTCAAGGAGGTGAGTTTTCTTCATCTCAGTCATCAGCTCATCGTCGTAGGAGTCATCAAAGTACTAAGAGGAGGCATCAGTAA 1680 0.4589 MASSLFTFSLFLFFTLSSASNHHHHHSPTPAPTVSHSTVSEIQQACKATRFPQQCESSLTNLTTSPTTLQLLQSAISHSSENLVTALSMVKEIQKTSKDSQNRTVASTTCIETLTNSQHRISTANDALERGKIKDARAWLSAALAYQYDCWSGLKYANDTHAVGEAMAFIDSLTMLSSNALSMAFSYDVYGNDTSAWKPPTTERDGLWQTSGSGGGSGFQGEIPLNLKADVTVCKGGGKECYKTVQEAVNAAPDNGVGGKRFVIYIKEGIYEETVRVPLEKRNVVFLGDGIGKTVITGSANVGQPGMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNSAAIFQDCQVLVRPRQLKPEHGENNAITAHGRTDPAQTTGFVFQNCLINGTEDYMALYHSKPKVHKNYLGRPWKEYSRTVYINSTLEELITPEGWMPWNGDFALKTLYYGEFENSGAGSDLSQRVSWSSKIPAEHVVSYSVENFIQGGEFSSSQSSAHRRRSHQSTKRRHQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05175 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 183 IPR035513 -
Trre7g05175 559 PANTHER PECTINESTERASE 17 533 - -
Trre7g05175 559 NCBIfam pectinesterase inhibitor domain 6 182 IPR006501 GO:0004857
Trre7g05175 559 SUPERFAMILY Pectin lyase-like 228 538 IPR011050 -
Trre7g05175 559 Gene3D - 225 547 IPR012334 -
Trre7g05175 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 186 IPR035513 -
Trre7g05175 559 Pfam Plant invertase/pectin methylesterase inhibitor 41 183 IPR006501 GO:0004857
Trre7g05175 559 MobiDBLite consensus disorder prediction 538 559 - -
Trre7g05175 559 Pfam Pectinesterase 230 535 IPR000070 GO:0030599|GO:0042545
Trre7g05175 559 CDD PMEI-like_3 45 183 - -
Trre7g05175 559 FunFam Probable pectinesterase/pectinesterase inhibitor 51 40 186 - -
Trre7g05175 559 FunFam Pectinesterase 225 549 - -
Trre7g05175 559 SMART PMEI_2 37 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05175 Trre-Chr7 58333605 58336168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05175 35 540 Carbohydrate Esterase AT5G09760 64.397 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05175 - - mtr:11442613 897.116