Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05169 ATGGTTAGAGACGATTTATACATCACTGTTCCGAGTTTATTCCGGTGTCCTATTTCCCTCGACGTCATGAAATCTCCGGTGAGTCTCTGTACCGGAGTTACCTACGACCGTTCCAGTATCCAACGTTGGCTTGATAACGGTAATAATACTTGTCCTGCTACTATGCAGATTCTTCAAACCAAAGATTTCGTTCCGAACCGGACGTTACAGAGACTCATTCAGATCTGGTCCGATTCGGTTCGTCACCGAGTTGACTCGTCCGAGTCTATGATATCTAATGAATCGGTTGATAAACGTGATCAATTACTTGTTGCTATTACTGATTTAGAGTCCGGTAGTAAGAATCGGTTTGAGTCGCTTGAGAAAATTGTGCGGTTCGCTAAAGATTCTGAAGAGAATAGTGTTTTTCTAGCTAAAACGGAAGGATTCGTGGCTTTGTTGGTAGGTTTTCTTGATAATGTTGATGGTGGAGTTGAACGGAGTGTTGAATTGCTTGAACAAGTTGTTGTTGCATTGGATTTGGTGCTAAGTAAAATAGACAATCGTGACTCGATTTTGAAGAGCCAGAAGGAGAAGGAGGTGCAGAGTTTGGATTCTTTGCTTCTTGTTTTGAAACAAGGAAGCTGTGAATCGAAGATTGCATCGGTTAGGGTTTTGAAATCCATAGCGGTAGATACAGAATCGAAGCTTCTAATAGCGGAAAAAGAAGGTTTAGTAACAGAATTGCTTAATCTAATCACGCCGGAGAAAGATCCGAACGTAATCGAGAACGCACTTTCGTGTCTGGTGGCAATCTCAACGCCGAAACGGAACAAATTGAAACTGATTCATCTCGGAGCAGTGAAGTGTCATCAACGAAGGAAGGGAGATCGGAGATATGTGAAGAACCGTCGTGTGTGGCGGCGATAG 909 0.429 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQRLIQIWSDSVRHRVDSSESMISNESVDKRDQLLVAITDLESGSKNRFESLEKIVRFAKDSEENSVFLAKTEGFVALLVGFLDNVDGGVERSVELLEQVVVALDLVLSKIDNRDSILKSQKEKEVQSLDSLLLVLKQGSCESKIASVRVLKSIAVDTESKLLIAEKEGLVTELLNLITPEKDPNVIENALSCLVAISTPKRNKLKLIHLGAVKCHQRRKGDRRYVKNRRVWRR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05169 302 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Trre7g05169 302 PANTHER WDSAM1 PROTEIN 9 282 IPR045185 GO:0061630
Trre7g05169 302 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Trre7g05169 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Trre7g05169 302 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Trre7g05169 302 Gene3D - 94 284 IPR011989 -
Trre7g05169 302 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Trre7g05169 302 CDD RING-Ubox_PUB 11 63 IPR045210 -
Trre7g05169 302 SUPERFAMILY ARM repeat 110 282 IPR016024 -
Trre7g05169 302 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05169 Trre-Chr7 58287764 58288751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05169 1 277 U-box Gene Family AT5G64660 51.220 3.42e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05169 - - cam:101496984 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05169 7 58287764 58288751 Trre7g05169 7 58287764 58288751 ECH
Trre5g04273 5 44694709 44695953 Trre7g05169 7 58287764 58288751 ECH
Trre7g05169 7 58287764 58288751 Trre5g04273 5 44694709 44695953 PCT