Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05165 ATGAGTTTGATGGGTACGGAAAGCTCAGAAAAAGTTGCAGGGCACCTTGAGCCACCTGATCCTAATGTCGAAGAAATTGATCCTACTGGTCGTTACATTAAGTATAAAGAAGTGATCGGCAAAGGAGCATTCAAAACTGTTTACAGGGCATTCGATGAGGTAAATGGAATTGAAGTTGCTTGGGGACAGATTCAGATTGATGAGTTGTTAAAGAGACCGGGTGACTTAGACAGGTTATATTCAGAAGTGCATCTTTTAAAGTCGCTGAGGCACAATAACTTAGTAAGATTCTACAATTCTTGGATTGATGACAAGCGAAAGACTGTTAATATGATTACTGAGTTGTTTACCTCGGGTAGCCTTAGACAGTATCGTAAAATACACAAGAACGTTGACTTGAAGGCTGTTAAAGGATGGGCAAGACAGATTCTATTGGGTTTAAACTACCTCCACAATCATAATCCGCCAATTATACACAGGGACTTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGCGATTTAGGGCTGGCGACTTTCTTGACACAGGCTAATGCTAAGACTGTTATCGGTACTCCAGAGTTTATGGCACCTGAAGTGTATGATGAAAATTACAACGAATTAGCTGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCCGAGAAACCTTACGGTGAATGCATAAACTCTGCGCAGATATTCAAGAGAGTTTCATATGGTATAATGCCTGTTGCACTTTCTAAAGTGATAGATCCTGAGATAAAGGCATTTATTGAGAAATGTCTTGTTCCAGCATCCCAAAGATTGTCAGCAAAGGAGCTTCTAATGGACCCCTTTGTTCAAGTGAATGGTTCAGCACAGAACATTTCTTTTCCGTTGCCAGATATTGTTCTTCCCAAATTGGGAGCCTCTGAAAACAGATGCTTGATGTCAAAAGGTCCTGCTAGTGCACGTAGTGAGGCCGTTTCTATGGATCTTTGTGACACTAACAAGCTGCCTGTGAATGCTATCACTGTACTTGATAATTCCACTATTGATGTGTCATCTTCTCCAAGTGTTGAGATAAGAAGGTTGAAGGGAGGTGATACCTTCTTTCTAAAAGGTGATCAAAATGATGAGAATTCTGTGTCATTAGTTCTGCGGATAACTGATCAGAAGGGACAAGCAAGAACTATCCATTTCACCTTCTACCTTGACAGTGATACTGCTGTCTCAGTTTCAAAGGAAATGGTTGAGCAAACTGAACTTGATAATCAGATTGTAATATTTATAGCTGAGTTACTTGATCTGTTATTGATGAAATTGGTTCCTAAATGGAAACCTTGTGTAGCAATTGATCATTTGGTTTCTGCAAATGGTAAATGGACTTGTGCTAACCAACTGTGTGTCTCAGAATTGGCTAAAAACAAAGGAAGCCCAAAACATTCCACTGAAGATGCAAGTCGCTCAACCTCATTTGGAAGATCAGCTGTAAAAGAGAACGTTGACAATATGGATTTATGTTCTGAGATGTCACATGCTTCTGCTACATCAGGCGTCAATGATAAGTTTTCTATGGTTTCACTTATATCTGCTGAATCGGGATTTGATGGAGGGAGTCAGAGCTCGTTTGCATCTGAAATCTGGGGATCATCTGATTATAGGAGCAAGTGTTTAGACACGGGGAGTAACAGTATGGCGAGCTTCTCAAGTTATCCCATTAGTGTTTCCTCCATGACTGAACTTGATGATGAGTTAAGAGTAGAGTTAGAAATGATTGAACAGAAATTTCAAGAGGCAATTAGAGATTTGTCAAGGAAAAAGTACCAGGCCATTGAGGAGATTAAAAAGAGAATGTCAGAGAAAATGGTATCATAG 1887 0.3948 MSLMGTESSEKVAGHLEPPDPNVEEIDPTGRYIKYKEVIGKGAFKTVYRAFDEVNGIEVAWGQIQIDELLKRPGDLDRLYSEVHLLKSLRHNNLVRFYNSWIDDKRKTVNMITELFTSGSLRQYRKIHKNVDLKAVKGWARQILLGLNYLHNHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATFLTQANAKTVIGTPEFMAPEVYDENYNELADIYSFGMCMLELVTSEKPYGECINSAQIFKRVSYGIMPVALSKVIDPEIKAFIEKCLVPASQRLSAKELLMDPFVQVNGSAQNISFPLPDIVLPKLGASENRCLMSKGPASARSEAVSMDLCDTNKLPVNAITVLDNSTIDVSSSPSVEIRRLKGGDTFFLKGDQNDENSVSLVLRITDQKGQARTIHFTFYLDSDTAVSVSKEMVEQTELDNQIVIFIAELLDLLLMKLVPKWKPCVAIDHLVSANGKWTCANQLCVSELAKNKGSPKHSTEDASRSTSFGRSAVKENVDNMDLCSEMSHASATSGVNDKFSMVSLISAESGFDGGSQSSFASEIWGSSDYRSKCLDTGSNSMASFSSYPISVSSMTELDDELRVELEMIEQKFQEAIRDLSRKKYQAIEEIKKRMSEKMVS 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05165 628 Gene3D - 384 457 - -
Trre7g05165 628 SUPERFAMILY Protein kinase-like (PK-like) 34 291 IPR011009 -
Trre7g05165 628 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Trre7g05165 628 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05165 628 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Trre7g05165 628 MobiDBLite consensus disorder prediction 479 498 - -
Trre7g05165 628 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Trre7g05165 628 CDD STKc_WNK 31 289 - -
Trre7g05165 628 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05165 628 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 622 - -
Trre7g05165 628 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05165 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Trre7g05165 628 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Trre7g05165 628 MobiDBLite consensus disorder prediction 13 27 - -
Trre7g05165 628 MobiDBLite consensus disorder prediction 1 27 - -
Trre7g05165 628 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 386 438 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05165 Trre-Chr7 58238760 58241578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05165 25 621 MAP Kinase Kinase Kinase AT5G41990 44.352 7.06e-159 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre7g05165 Pkinase 8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05165 K08867 - gmx:121175054 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05165 7 58238760 58241578 Trre7g05165 7 58238760 58241578 ECH