Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05163 ATGAATATAATGGATTATGAGCAATTTGATTACTCATTTATCCCTCCTTACATGAATCAGCGGCATGAGTGTAGCTTAGAAAATGCATCTACATTCCAAACAGAAGATTTGTTATCTCCTAATACAATCTTAGATGAAATATTATTTGATCAAGATCAATTAGAAGATCTCTTATCTCCAGATATCATCCTAAACGAAATTTTCGATCAGGATGAGTCCATGGAAGGATTGCTGCAGCAACACACAAACCATGAATTCGATAACATAAACCATGACCAGACAATGCTTCTAGCGAATGAATCGTGTCATCAAGTTACTGAGAAAGGCCGTAAAAATGATGATTCTTATTGGAAGGTAGTTCAAGAAGAGTTAATGGAAGAGACAAGTTTAGTTGATTTGTTGCTGATAGGAGCTGAAGCTGTTGAGTCACAGAACATGACTCTTGCTTATGAAATAATCGAAAAACTAAACAATGCCTCGTCTTTAGAAAAAGGCGATAGTTTATTGAACAGGCTGTGTCCTTTCTTTACTCAAGGTTTGTATTATAAAACTACAAATGCTGCTGAATTCCACTGTGATCATGTTTCTACACAGACAAACACATTCTGTGTTTTTCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACAGCAAACCAAGCAATTTTAGAAGCTACGGACGGTGCTGAGCAAGTTCATGTCATTGATTTTGATATCATGGAGGGAATCCAATGGCCACCATTGATGGTTGACTTTGCAATGAGAAAAAACACCACTTCCCTTAGAGTAACAGCAATCACAGTGGATCAGCAAAGTGCAGCCTCGGTTCAACAAACAGGAAGAAGGCTCAAAGAGTTTGCAGATTCAATCAGTTTTCCATTCGTGTTTGATACGATGATGATGGTGAATGAAGAAGATTTTCAAGAAATTGAACTTGGTGGCACACTTATTGTCAATTGTATGATACATCAGTGGATGCCAAACAGAAATTTCTCACTGGTCAAAACTTTTCTTAATGGTGTAAGAAAATTATCGCCCCGGCTTTTTGTTTTAGTAGAAGAAGAACTGTTTAATTTTTCTAGACTCAAATCTATGTCTTTTGTGGAGTTTTTCTGTGAAGCTTTGCATCACTATATAGCAGTTTCTGATTCACTTGTTAGTACTCTTTGGAGTAGTCATAAGATGGAGTTAAATCTTATAGTGAAAGAGGTTTTGGGAAATAGAATTTTAGACAGTGTAAGACAGTTTCCTAGTGAAAGAGAGGAGAGAATATTGTGGGAAGAAAGGTTTTTTTATTCATTGAAAGGGTATAAACATGTTGGTATGAGTACATGTAATATTTCACAGGCTAAGTTATTGGTTAGCTTGTTTGGTAAAGGGTATTGGGTGCAATTTGAGAATTTTAGGTTGGCTTTGTGTTGGAAGTCAAGACCTTTGACTTCTGTTTCAATCTGGGTACCAACAGATTATATTAAGAGTGACAAGGTCAAATAG 1506 0.3612 MNIMDYEQFDYSFIPPYMNQRHECSLENASTFQTEDLLSPNTILDEILFDQDQLEDLLSPDIILNEIFDQDESMEGLLQQHTNHEFDNINHDQTMLLANESCHQVTEKGRKNDDSYWKVVQEELMEETSLVDLLLIGAEAVESQNMTLAYEIIEKLNNASSLEKGDSLLNRLCPFFTQGLYYKTTNAAEFHCDHVSTQTNTFCVFQILQELSPYVKFAHFTANQAILEATDGAEQVHVIDFDIMEGIQWPPLMVDFAMRKNTTSLRVTAITVDQQSAASVQQTGRRLKEFADSISFPFVFDTMMMVNEEDFQEIELGGTLIVNCMIHQWMPNRNFSLVKTFLNGVRKLSPRLFVLVEEELFNFSRLKSMSFVEFFCEALHHYIAVSDSLVSTLWSSHKMELNLIVKEVLGNRILDSVRQFPSEREERILWEERFFYSLKGYKHVGMSTCNISQAKLLVSLFGKGYWVQFENFRLALCWKSRPLTSVSIWVPTDYIKSDKVK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05163 501 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 113 486 IPR005202 -
Trre7g05163 501 Pfam GRAS domain family 130 489 IPR005202 -
Trre7g05163 501 ProSiteProfiles GRAS family profile. 121 490 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05163 Trre-Chr7 58233394 58234899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05163 203 489 GRAS Transcription Factor Family AT1G55580 36.076 4.86e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre7g05163 GRAS 1.5e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05163 - - lja:Lj0g3v0198459.1 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05163 7 58233394 58234899 Trre7g05163 7 58233394 58234899 ECH