Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05160 ATGTATGCTTCTACTTCCTTTACTTCACAACTCATCAATGATCTTCTTGTCGAATCCCACACAAGAAGATTACTCTTCCAAGCCCCAATTGTTCATCAATCACCAACCAACTCCCCTGTTTTAACAAACAACCATACTTCAACCGACTCTTATTTCGGTGAATTTGATTCAAATGTTGTGATGATACTTGCAGTCCTATTATGTGCTCTTATTTCCTCACTTGCATTAAACTCCATCATAAAGTGTGCCTTAAGATTTTTAAACGTAGCCATCAACAATGACGATTCTTCGAGTACAAGTAACAACTCATCACAAAAATTGGCCAACAAAGGAATAAAAAAGAAAGCTCTCAAAACATTTCCAACGGTGAGCTATTCGACTAAGTTGGAACTACCTGGTTTAGATACTGAGTGTGTGATATGTATCTCAGAGTTCATAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATAGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAAAACTCATCATGTCCTAAATGTAGACAATGTCTTCTTGAAACTTGTCAAAAGATTGTTGGGTCGCAGGTGCAAGAAATTGTGTTGCCGGTGCCAGAAACCATTATAAGGATCCAACCACTAGAGCATGAAGCTTTAGAACGTAATTACCTTCCTTAA 672 0.3795 MYASTSFTSQLINDLLVESHTRRLLFQAPIVHQSPTNSPVLTNNHTSTDSYFGEFDSNVVMILAVLLCALISSLALNSIIKCALRFLNVAINNDDSSSTSNNSSQKLANKGIKKKALKTFPTVSYSTKLELPGLDTECVICISEFIKGEKVRILPKCNHSFHVRCIDKWLKENSSCPKCRQCLLETCQKIVGSQVQEIVLPVPETIIRIQPLEHEALERNYLP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05160 223 SUPERFAMILY RING/U-box 116 185 - -
Trre7g05160 223 PANTHER RING-H2 FINGER PROTEIN ATL78 16 216 IPR044602 GO:0016567|GO:0016740
Trre7g05160 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 184 IPR013083 -
Trre7g05160 223 SMART ring_2 138 179 IPR001841 -
Trre7g05160 223 FunFam RING-H2 finger protein ATL73 97 185 - -
Trre7g05160 223 CDD RING-H2_EL5-like 137 180 - -
Trre7g05160 223 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Trre7g05160 223 Pfam Ring finger domain 137 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05160 Trre-Chr7 58206933 58207604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05160 49 184 C3H Transcription Factor Family AT3G10910 51.079 2.15e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05160 K19040 - gmx:100780127 300.441