Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05159 ATGTATGCTTCTACTTCTTTTACTTCACAACTCATCAATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTTTTCCAAGACCCAATTGATCATCAATCACCAACTACCTCCCCTACTTTAACAAACAACCATAATTCAACAGACTCATATTTTGGAGTTCATGAATTTGATTCAAATGTTGTGATGATACTTGCAGTCTTATTATGTGCTCTTATTTGCTCACTTGCATTAAATTCTATTATAAGGTGTGCCTTAAGATTTTCAAATGTAGCCATCAACAACGATTCTTCTTCGAGTTCAAGCAACAATACTTCAACTGATGAATTGGTCAACAAAGGAATCAAAAAGAAAGCTCTCAAGAAATTTCCTACAATGAGTTATTCAACTGAGTTGAAACTACCAGGTTTGGACACTGTGTGTATGATATGTATCTCAGAGTTCACAAATGGTGAAAAAATGCGCATTTTACCTAAATGCAATCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAATGCCTTCTTGAAACTTGTCGAAAGGTTGGTGGATCACAGGTGCAACCAGTTGTGTTGCCAGTGCCAGAAACCATTATAAGGATCCAACCCCTAGAGCATGAAGCTTTAGAACGTAGCTATAGAGAAATATAA 684 0.3684 MYASTSFTSQLINELLVESHTRRLLFQDPIDHQSPTTSPTLTNNHNSTDSYFGVHEFDSNVVMILAVLLCALICSLALNSIIRCALRFSNVAINNDSSSSSSNNTSTDELVNKGIKKKALKKFPTMSYSTELKLPGLDTVCMICISEFTNGEKMRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKVGGSQVQPVVLPVPETIIRIQPLEHEALERSYREI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05159 227 PANTHER RING-H2 FINGER PROTEIN ATL78 16 219 IPR044602 GO:0016567|GO:0016740
Trre7g05159 227 SMART ring_2 141 182 IPR001841 -
Trre7g05159 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 187 IPR013083 -
Trre7g05159 227 FunFam RING-H2 finger protein ATL73 100 188 - -
Trre7g05159 227 Pfam Ring finger domain 140 183 IPR001841 -
Trre7g05159 227 SUPERFAMILY RING/U-box 119 188 - -
Trre7g05159 227 CDD RING-H2_EL5-like 141 183 - -
Trre7g05159 227 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05159 Trre-Chr7 58202366 58203049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05159 57 187 C3H Transcription Factor Family AT3G10910 52.632 5.07e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05159 K19040 - gmx:100780127 305.834