Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05158 ATGTATGCTTCTACTTCCTTCACTTCACCACTACATGAGCTTCTTGTGAAATCTCATACAAGAAGGTTACTCTTTCAAAACACAAATGAACATCAATCACTTAAAATCGACTCCCATGTTTTCACAAACAACGGCGCCAATTCAACCGACTCAAATTTTGACGCTCGTGAATTTGATTCAAATGTTGTGATGATAATTGCAAGCTTACTATGTTGTTTTATTTGCTTGCTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGGTTTTCAAATGTAGCCATCAACAATGACTCTTTTTCGAGTTCGAGTAGCAACCCTTCACCTCAATTGGTCAATAAAGGAATCAAGAAGAAAATTCTCAAGAAATTTTCTACAATGAGCTATTCAACTGAGTTGAAACCACCAAGTTTGGATACAGAGTGTATGATATGCCTCTCAGAGTTCGTAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCACGTTCGTTGCGTTGATAGATGGCTAAAGGAACACTCGTCATGTCCCAAGTGTAGACAATGCCTTCTTGAAACTTGTCGAAAGATTGGTGGGTCGCAGGTGCAACCAATTGTGTTGCCAGTTCCAGAAACCATTATAAGGATCCAACCACTAGAGCCTGAAGCTTTGGAGCATAATTATAGGGAACAAATATAA 687 0.3901 MYASTSFTSPLHELLVKSHTRRLLFQNTNEHQSLKIDSHVFTNNGANSTDSNFDAREFDSNVVMIIASLLCCFICLLALNSIIRCALRFSNVAINNDSFSSSSSNPSPQLVNKGIKKKILKKFSTMSYSTELKPPSLDTECMICLSEFVKGEKVRILPKCNHGFHVRCVDRWLKEHSSCPKCRQCLLETCRKIGGSQVQPIVLPVPETIIRIQPLEPEALEHNYREQI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05158 228 CDD RING-H2_EL5-like 140 183 - -
Trre7g05158 228 SUPERFAMILY RING/U-box 120 188 - -
Trre7g05158 228 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Trre7g05158 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Trre7g05158 228 SMART ring_2 141 182 IPR001841 -
Trre7g05158 228 PANTHER RING-H2 FINGER PROTEIN ATL78 15 219 IPR044602 GO:0016567|GO:0016740
Trre7g05158 228 FunFam RING-H2 finger protein ATL73 100 188 - -
Trre7g05158 228 Pfam Ring finger domain 140 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05158 Trre-Chr7 58194921 58195607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05158 58 187 C3H Transcription Factor Family AT3G10910 48.872 2.04e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05158 K19040 - gmx:100780127 289.271