Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05156 ATGTATGCTTCTACTTCCTTTACTTCACAACTCGTCCATGAGCTTCTTGTGGAATCTAACACAAGAAGGTTACTCTTTCAAGACCCAGTTGATCATCGATCGCTAACCGACTCCCCTGTTTTAACAAACAACCATAATTCAACGGACTCGTATTTTGGAATTCCCAAATTTGATGCGAATGTTGTGATGATACTAGGAGTCCTTTTGTGTGCTCTTATTTGCTCGCTTGCATTAACCTCCATCATAAGGTGTGCTTTAAGGTTTTTAAATGTAGCCATCAACAATGATTCTTCTTCGAGTTCGAGTACCAACTCTTCACCTCAATTGGCAAACAAAGGAATCAAGAAAAAAGCTCTCAAGACATTTCCCACAGTGAGCTACTCAACTGAGTTAAAACTACCAAGTTTGGATACAGAGTGTGTGATATGTCTCTCAGAATTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCACGGTTTCCATGTCCGTTGCATCGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGACAGTGTCTCCTTGAGACTTGTCGAAAGATTGTTGGGTCGGAAGCACCATCTATGTTGCCAGTGCCAGAAACTATTATTAGGATTCAACCACTAGACCATGAAGTTTTTGAACGTAACTATAGGGAAGAAAGCAGATAA 684 0.4108 MYASTSFTSQLVHELLVESNTRRLLFQDPVDHRSLTDSPVLTNNHNSTDSYFGIPKFDANVVMILGVLLCALICSLALTSIIRCALRFLNVAINNDSSSSSSTNSSPQLANKGIKKKALKTFPTVSYSTELKLPSLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGSEAPSMLPVPETIIRIQPLDHEVFERNYREESR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05156 227 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Trre7g05156 227 SUPERFAMILY RING/U-box 118 187 - -
Trre7g05156 227 SMART ring_2 140 181 IPR001841 -
Trre7g05156 227 Pfam Ring finger domain 139 182 IPR001841 -
Trre7g05156 227 CDD RING-H2_EL5-like 139 182 - -
Trre7g05156 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Trre7g05156 227 FunFam RING-H2 finger protein ATL73 99 187 - -
Trre7g05156 227 PANTHER RING-H2 FINGER PROTEIN ATL78 18 216 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05156 Trre-Chr7 58182448 58183131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05156 57 186 C3H Transcription Factor Family AT3G10910 51.880 6.73e-42 139