Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05155 ATGTATGCTTCTACTTCCTTTACTTCACAACTTGTCCATGAGCTTCTTGTTGAATCCCACACAAGAAGGTTACTCTTCCAAAGCCCGATTGATCATCAATCACTAACCAATTCCCCTATTCTAACACAGAACCATAATTCAACCAATTCATATTTCGGAATTCGGGAATTTGATGCAAATGTTGTGATGATACTAGCAGTCCTATTGTGTGCACTTATTTGCTCACTTGCGTTGAACTCTATCATAAGATGTGCCTTAAGGTTTTCAAACGTAACCGTGAACAACAACTCTTCTTCGAGTTCGAGTGCCAATTCTTCACCTCAATTGGTCAACAAAGGAATCAGGAAGAAAGCTCTCAAGACATTTACCACATTGAGCTACTCAACTGAGTTGAAACTACCAAGTTTGGACACGGAGTGTATGATATGTCTCTCAGAATTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCACGGATTTCATGTTCGTTGCATTGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGACAGTGTCTCCTTGAGACTTGTCGAAAGATTGTTGAGTCGGAAGCACCACCTATGTTATCAGTGCCAGAAACTATTATTAGGATTCAGCCACTAGTCGCTGAAGCTTTTGTACGTAACTATAGGGAAGCAAGCTGA 681 0.4126 MYASTSFTSQLVHELLVESHTRRLLFQSPIDHQSLTNSPILTQNHNSTNSYFGIREFDANVVMILAVLLCALICSLALNSIIRCALRFSNVTVNNNSSSSSSANSSPQLVNKGIRKKALKTFTTLSYSTELKLPSLDTECMICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVESEAPPMLSVPETIIRIQPLVAEAFVRNYREAS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05155 226 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Trre7g05155 226 CDD RING-H2_EL5-like 139 182 - -
Trre7g05155 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 186 IPR013083 -
Trre7g05155 226 PANTHER RING-H2 FINGER PROTEIN ATL78 16 216 IPR044602 GO:0016567|GO:0016740
Trre7g05155 226 SUPERFAMILY RING/U-box 124 187 - -
Trre7g05155 226 SMART ring_2 140 181 IPR001841 -
Trre7g05155 226 Pfam Ring finger domain 139 182 IPR001841 -
Trre7g05155 226 FunFam RING-H2 finger protein ATL73 98 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05155 Trre-Chr7 58179819 58180499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05155 53 186 C3H Transcription Factor Family AT3G10910 51.799 5.60e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05155 K19040 - gmx:100780127 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05155 7 58179819 58180499 Trre5g04263 5 44599943 44600623 PCT