Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05144 ATGGATTTCGACGAGTACGAGTACTTGGAGAAGACGGTGGAGGAGCTACCGGAAGACAAAGATTCATCCAAAAAGAAGAAGTCCGACAGCGCCGACATTAAATCCGATAGAACTTACCGGAAACGCGACGTCGACGACGATCTGGACGGAGAAGATAGACGGAGCAAGAGGTCGCGCGCCGACGACGAGAATGGCTCTAAAAAGGATCGCGATAGAGATAGAGACCGGGAACGCGACCGTGACCGTGAGAGATCTTCCGGCCGGCATAGAGAGAGGGAGAGAGACGGAGAGAGAGGTAGCAGAGAGAAAGAGAGGGAGAAGGATGGAGAGAGAGGTGGCAGAGACAAAGAGAGAGATAAGGAGCGGGATAAAGAGAGAGAAAAGGAGAGGGAGAGAAGAGACAAGGAAAGGGAAAAGGAACGGGAGAGAAGAGAGAAAGAGAGAGAGAAGGAACGAGAGAGAGAAAAGGAGGAGAAAGAAAGACCAAGGAGGAGTATGAGTCGTCCTGAGAGAGATAGAGGAGAAAGAGTTGAGAGAGAGCGAGATTTTGAAAATAGAGATGGCAGGAGATTCAGGGATAAGAAAGACAACGCGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCCGGACAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCGGAAAAAAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACCGAGGCTAATCTCCGAGAGATTTTTGAGCCATTTGGTCAGATTGAAGTTGTACAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGCTTTGTTCAATTTGCCCATCTCGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTAGAGATTGCTGGCAGGACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGACTTTAAATGCCCACTCGAGGGCATTGCTTATGCAAAGGTTGGCTGGTGCTGACGTTCCCACAAGCATTGGTGTACCAAATGTGAATGGGTCGGTTCCTGTTCAGCAGCCTTTTAGCTTTCCTATTGGTAATCCAGGTGTTATACCCGCACCAGGTCTACCAACACAAATTATGCCTACTCCCGTGGTAGAACCAGTAGGAATCCCCAGCGAGTGTTTATTATTGAAGAATATGTTTGATCCAAACACCGAGACGGAACCAGATTTTGATATTGACATTAAAGAGGATGTAGAGGAAGAGTGTTCGAAATACGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTACTTACAGTTTGAAACAGTTGAAGCATCAAGTGCAGCACAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTATCTACATGGAACCACATTTATATGCAGCCAAGTTTAAGGGGGAATTGTGA 1728 0.4589 MDFDEYEYLEKTVEELPEDKDSSKKKKSDSADIKSDRTYRKRDVDDDLDGEDRRSKRSRADDENGSKKDRDRDRDRERDRDRERSSGRHRERERDGERGSREKEREKDGERGGRDKERDKERDKEREKERERRDKEREKERERREKEREKEREREKEEKERPRRSMSRPERDRGERVERERDFENRDGRRFRDKKDNAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADVPTSIGVPNVNGSVPVQQPFSFPIGNPGVIPAPGLPTQIMPTPVVEPVGIPSECLLLKNMFDPNTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIYMEPHLYAAKFKGEL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05144 575 FunFam Splicing factor CC1-like 138 294 - -
Trre7g05144 575 CDD RRM1_RBM39_like 210 282 - -
Trre7g05144 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre7g05144 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Trre7g05144 575 CDD RRM3_RBM39_like 480 562 - -
Trre7g05144 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Trre7g05144 575 SUPERFAMILY RNA-binding domain, RBD 201 294 IPR035979 GO:0003676
Trre7g05144 575 Gene3D - 476 574 IPR012677 -
Trre7g05144 575 Gene3D - 202 296 IPR012677 -
Trre7g05144 575 FunFam Splicing factor CC1-like 295 400 - -
Trre7g05144 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 404 499 IPR029123 -
Trre7g05144 575 Gene3D - 307 403 IPR012677 -
Trre7g05144 575 MobiDBLite consensus disorder prediction 13 208 - -
Trre7g05144 575 SMART rrm1_1 210 282 IPR000504 GO:0003723
Trre7g05144 575 SMART rrm1_1 482 559 IPR000504 GO:0003723
Trre7g05144 575 SMART rrm1_1 312 385 IPR000504 GO:0003723
Trre7g05144 575 SUPERFAMILY RNA-binding domain, RBD 311 563 IPR035979 GO:0003676
Trre7g05144 575 MobiDBLite consensus disorder prediction 1 210 - -
Trre7g05144 575 Coils Coil 114 161 - -
Trre7g05144 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 278 IPR000504 GO:0003723
Trre7g05144 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 557 IPR000504 GO:0003723
Trre7g05144 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 383 IPR000504 GO:0003723
Trre7g05144 575 NCBIfam splicing factor, CC1-like family 100 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05144 Trre-Chr7 58038230 58043753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05144 283 384 Eukaryotic Initiation Factors Gene Family AT4G34110 31.068 2.13e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05144 K13091 - gmx:100793461 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05144 7 58038230 58043753 Trre5g04221 5 43976686 43983624 ECH
Trre7g05144 7 58038230 58043753 Trre7g05144 7 58038230 58043753 ECH
Trre7g05144 7 58038230 58043753 Trre5g04221 5 43976686 43983624 PCT