Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05141 ATGTTTCCTGGTTTTCATAGAGAAGGAGAAATGTCAGCTATGGTTTCTGCTTTAACACATGTAATATGTGGTGGTCAGAACAATGATGATTTTAGTCTTCTGAATCAGAATATGAATCACACTGCATTTCATCAAGGAGATGGTAACCCTTTTGTTTCTGCAACAACTTCTTCAACTTCTTTATCTTATGGTGATAGTTCTTCTCTCAAGAGAAGAAGGGAAGATGATGGATTCTTTCACAATTCTTCTTCTGCTTTTCCCCCAAATAAGCACCAAGAATGTTCAAGCAACTGGACAAACACAATAACAACAGCAGAAAGAAGCCAAATATCAGAACCTATATATGAATACAGAACAGATAATAACAATGTGAAAAATGAAGAGCAACCAAAAAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTAAAGCATATGATCAAGCTGCATTGCGTTTTAGAGGCAATAAAGCAAAACTCAACTTTCCTGAAAATGTTAGGCTCAAGCAACAACCTTTGGTTAATCCAATACCAACCCATTTGAGTATTTCACATTCTAATAATGCCCTTTTGTCATCTCAATCTAACATTGATCCTACAGTTTATGGTCAAAACTTCCCTATGAGATTATATGATCAGATTACTATGTCATCATCTAATGAGATGGCTTCTCTTCAAACTTCAATGTCACCATCAGCTTCATATTCTTCTTCTACTACTACTATTGCTTCTTCTTTTAGTTCTCCACAGACAACTTCTTCGATTCCTTCGGTTTATACTACCGATTTGCCACCATGGTCTTCTGGTTTAAATTCATCTCCCTCAGGCTAA 912 0.3684 MFPGFHREGEMSAMVSALTHVICGGQNNDDFSLLNQNMNHTAFHQGDGNPFVSATTSSTSLSYGDSSSLKRRREDDGFFHNSSSAFPPNKHQECSSNWTNTITTAERSQISEPIYEYRTDNNNVKNEEQPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQAALRFRGNKAKLNFPENVRLKQQPLVNPIPTHLSISHSNNALLSSQSNIDPTVYGQNFPMRLYDQITMSSSNEMASLQTSMSPSASYSSSTTTIASSFSSPQTTSSIPSVYTTDLPPWSSGLNSSPSG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05141 303 MobiDBLite consensus disorder prediction 45 66 - -
Trre7g05141 303 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677
Trre7g05141 303 PANTHER DNA-BINDING DOMAIN 96 257 IPR044808 GO:0003700|GO:0009873
Trre7g05141 303 MobiDBLite consensus disorder prediction 249 303 - -
Trre7g05141 303 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
Trre7g05141 303 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Trre7g05141 303 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Trre7g05141 303 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Trre7g05141 303 MobiDBLite consensus disorder prediction 45 69 - -
Trre7g05141 303 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Trre7g05141 303 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Trre7g05141 303 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Trre7g05141 303 FunFam Ethylene-responsive transcription factor 2 132 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05141 Trre-Chr7 58012645 58013921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05141 126 194 AP2-EREBP Transcription Factor Family AT5G13330 77.143 1.05e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g05141 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05141 - - tpra:123913316 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05141 7 58012645 58013921 Trre7g05141 7 58012645 58013921 ECH
Trre7g05141 7 58012645 58013921 Trre5g04219 5 43954762 43956419 ECH