Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05140 ATGCCAATGATGTTTCCTGGTTTTCATAGAGAAGGAGAAATGTCAGCTATGGTTTCTGCTTTAACACATGTAATATGTGGTGGTCAGAACAATGATGATTTTAGTCTTCTGAATCAGAATATGAATCACACTGCATTTCATCAAGGAGATGGTAACCCTTTTGTTTCTGCAACAACTTCTTCAACTTCTTTATCTTATGGTGATAGTTCTTCTCTCAAGAGAAGAAGGGAAGATGATGGATTCTTTCACAATTCTTCTTCTGCTTTTCCCCCAAATAAGCACCAAGAATGTTCAAGCAACTGGACAAACACAATAACAACAGCAGAAAGAAGCCAAATATCAGAACCTATATATGAATACAGAACAGATAATAACAATGTGAAAAATGAAGAGCAACCAAAAAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTAAAGCATATGATCAAGCTGCATTGCGTTTTAGAGGCAATAAAGCAAAACTCAACTTTCCTGAAAATGTTAGGCTCAAGCAACAACCTTTGGTTAATCCAATACCAACCCATTTGAGTATTTCACATTCTAATAATGCCCTTTTGTCATCTCAATCTAACATTGATCCTACAGTTTATGGTCAAAACTTCCCTATGAGATTATATGATCAGATTACTATGTCATCATCTAATGAGATGGCTTCTCTTCAAACTTCAATGTCACCATCAGCTTCATATTCTTCTTCTACTACTACTATTGCTTCTTCTTTTAGTTCTCCACAGACAACTTCTTCGATTCCTTCGGTTTATACTACCGATTTGCCACCATGGTCTTCTGGTTTAAATTCATCTCCCTCAGGCTAA 921 0.3692 MPMMFPGFHREGEMSAMVSALTHVICGGQNNDDFSLLNQNMNHTAFHQGDGNPFVSATTSSTSLSYGDSSSLKRRREDDGFFHNSSSAFPPNKHQECSSNWTNTITTAERSQISEPIYEYRTDNNNVKNEEQPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQAALRFRGNKAKLNFPENVRLKQQPLVNPIPTHLSISHSNNALLSSQSNIDPTVYGQNFPMRLYDQITMSSSNEMASLQTSMSPSASYSSSTTTIASSFSSPQTTSSIPSVYTTDLPPWSSGLNSSPSG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05140 306 Gene3D AP2/ERF domain 135 195 IPR036955 GO:0003700|GO:0006355
Trre7g05140 306 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
Trre7g05140 306 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Trre7g05140 306 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
Trre7g05140 306 MobiDBLite consensus disorder prediction 48 72 - -
Trre7g05140 306 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
Trre7g05140 306 PANTHER DNA-BINDING DOMAIN 99 260 IPR044808 GO:0003700|GO:0009873
Trre7g05140 306 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Trre7g05140 306 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Trre7g05140 306 Pfam AP2 domain 136 185 IPR001471 GO:0003700|GO:0006355
Trre7g05140 306 MobiDBLite consensus disorder prediction 48 69 - -
Trre7g05140 306 FunFam Ethylene-responsive transcription factor 2 135 194 - -
Trre7g05140 306 MobiDBLite consensus disorder prediction 252 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05140 Trre-Chr7 58012645 58013930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05140 129 197 AP2-EREBP Transcription Factor Family AT5G13330 77.143 1.18e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g05140 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05140 - - tpra:123913316 478.018