Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05131 ATGGGATGTGTCAGTAGCAAGACTCCCCCTCGAAAAATAAACCGAAACCGGAGTCGCCATGTTGATAGGTTGAAAGATCAGTATGCAAACAGTGATTCTGCACTCAAACCAATTATCACCCATAACAAGACTTATTCATCTAAACACTCAGAAGTGGAGAGTAAGAAGAGAGCTCTGACTGTGAAGACTACTACTTCAAGTGAGAATCTTAGCGGAGGAGGAAGAAGAGGAGGAGAAGAAAGGGACGACGAAAAGATAAAGGGTGTTGCTAGAGATGTTGATGATGATAATAAGTCTGAAGAGGAGGATGAGGAGAATAAGAACAATAATATTGCAAGCCATGAAGTTAAAGTGGGAGATGGTGAGTGGCCCAAATGGCTGGTCGATAATATTCCTGAAAATGTTTTGGCTACTTTGATTCGAAAGACTGCTGATTCCTATGAGAAACTAGGAAAGGTAGGACGTGGAACATATAGTAATGTATATAAAGCAAGAGATAAGGACACTGGAAAGATTGTTGCATTGAAGAAGGTAAGATTTGATACTTCAGATTCTGAAAGTATCAAGTTTATGGCAAGAGAGATTATGATAATACAAACGCTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATTTAGTCTTTGAATACATGCAATGTGACCTGACTAGAGTTATCTCTCGCCCCGGAGAAAGACTCTCCGAACCACAGATAAAATGTTACATGCAGCAGCTACTTTTGGGACTCCAGCATTGTCATGAGAGGGGAGTTATGCACAGAGATATTAAAGCTTCTAATTTGTTAATAGATAAAAAAGGGGTGCTAAAAATTGCTGATTTTGGGCTTGCAAATTCTTTAAAAATTAAACCTAAAGGACCTCTTACAAATAGAGTTGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTATGATTATAGCATTGATATATGGAGTGTAGGTTGCTTATTGGGTGAGATGTTTGTGGGAAGACCAATTTTGCCTGGAAGGACAGAGATTGAACAGATTCATATGATATACAAACTTTGTGGTTCACCTCCGGAGGATTACTTGACAAAAATGAAGCTAAAGACAAGCTTCCGTCCACCACATCGTTATAAAGCTAGTTTTGAAGAAAATTTTAAGGATTTCCCTTCACCTGCCCTTAATCTCTTGACTACACTTCTTGATCTAGACCCTAAACTCCGTGGTACTGCTGCCTCTGCCCTTGAAAGTCAATTCTTCAAATCTCGTCCATTAGCATGCGGCATTTCAGAATTACCGGTAATAATCAACAAAGGTGATGATGAACGATCTCAAAACAAGAGACGCAAAAGGCGCAAAGGTTTGAAAAAAGGGCAACTATCTAAAAGAAGTGCAAGCCATTCAAACCTGTCAGGAATGAACCAAGCTGTCGAACAATTCAAGACAGATTCAGAAGCATCAAAGGAGGAGAAGAGTAGAGGACAAAACATGCTAGGACCAGAGACAGGGAATAGTGGAAGCAGCAGCAAATCATCATCAATATTTACTAGCGAAAGGAGCATGAATGCATCTATATCCCCAGTTTTTCTCTCTAGCAGGAAAATATCCCCCAAAACTGAAGGCCATCCTAATGCTCTTAAGAATATAAAGAACTACACACTCTTACAAGCATCTATACTTGATATGATCAACCCCAAAGAAGGCAACGATTTTGGTCAGTTTCGTAGGTCTTTCTCTACGTTGGATTTTCGGCTTGATCCAGAGAAACTGTCAAGTCTCTACGGAGCAAGTACTAAGTTGGACAAGGAAGTTTGA 1842 0.3969 MGCVSSKTPPRKINRNRSRHVDRLKDQYANSDSALKPIITHNKTYSSKHSEVESKKRALTVKTTTSSENLSGGGRRGGEERDDEKIKGVARDVDDDNKSEEEDEENKNNNIASHEVKVGDGEWPKWLVDNIPENVLATLIRKTADSYEKLGKVGRGTYSNVYKARDKDTGKIVALKKVRFDTSDSESIKFMAREIMIIQTLDHPNVIKLEGLATSRMQYSLYLVFEYMQCDLTRVISRPGERLSEPQIKCYMQQLLLGLQHCHERGVMHRDIKASNLLIDKKGVLKIADFGLANSLKIKPKGPLTNRVVTLWYRAPELLLGSTDYDYSIDIWSVGCLLGEMFVGRPILPGRTEIEQIHMIYKLCGSPPEDYLTKMKLKTSFRPPHRYKASFEENFKDFPSPALNLLTTLLDLDPKLRGTAASALESQFFKSRPLACGISELPVIINKGDDERSQNKRRKRRKGLKKGQLSKRSASHSNLSGMNQAVEQFKTDSEASKEEKSRGQNMLGPETGNSGSSSKSSSIFTSERSMNASISPVFLSSRKISPKTEGHPNALKNIKNYTLLQASILDMINPKEGNDFGQFRRSFSTLDFRLDPEKLSSLYGASTKLDKEV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05131 613 Gene3D Transferase(Phosphotransferase) domain 1 230 468 - -
Trre7g05131 613 FunFam Putative serine/threonine-protein kinase 230 468 - -
Trre7g05131 613 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524
Trre7g05131 613 Gene3D Phosphorylase Kinase; domain 1 136 229 - -
Trre7g05131 613 FunFam probable serine/threonine-protein kinase At1g54610 134 229 - -
Trre7g05131 613 PANTHER CELL DIVISION PROTEIN KINASE 145 434 - -
Trre7g05131 613 MobiDBLite consensus disorder prediction 74 95 - -
Trre7g05131 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Trre7g05131 613 MobiDBLite consensus disorder prediction 449 527 - -
Trre7g05131 613 MobiDBLite consensus disorder prediction 506 527 - -
Trre7g05131 613 ProSiteProfiles Protein kinase domain profile. 147 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05131 613 Coils Coil 97 117 - -
Trre7g05131 613 Pfam Protein kinase domain 147 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05131 613 MobiDBLite consensus disorder prediction 470 490 - -
Trre7g05131 613 MobiDBLite consensus disorder prediction 1 115 - -
Trre7g05131 613 SUPERFAMILY Protein kinase-like (PK-like) 141 433 IPR011009 -
Trre7g05131 613 SMART serkin_6 147 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05131 Trre-Chr7 57952458 57956090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05131 142 485 Core Cell Cycle Gene Families AT5G10270 43.407 2.64e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre7g05131 Pkinase 9.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05131 K08819 - gmx:102667260 700.664