Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05100 ATGGCACCGAAGAAGGAGAGAACACCTAGGGTTACCAGAAACCCTGATTTGATTAGGGGAATTGGAAAGTTCTCAAAATCTCAGATGTACCACAAGAGAGGTATCTGGGCTATTAAGGCCAAAAACGGCGGCGTTTTACCTCGCCATGATCCTAAACCTAAACCTGAATCTCCTGCTGAGAAACCACCCAAATTTTACCCTGCTGATGATGTGAAGATACCTCTTCGCAACAAGCATAAGCCTAAGCCTACTAAGCTCAGGGCTAGCATTACTCCAGGGACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGCAAGAGGGTGGTGTTTTTGAAGCAGCTTCCATCTGGATTGCTTCTTGTAACTGGCCCATTCAAGATTAATGGAGTTCCTTTGAGACGTGTGAACCAGGCCTATGTGATTGGTACATCAACCAAAGTAGATATCTCTGGTGTTAATGTGGATAACTTTGATGATAAGTACTTTTCAAAGGAATCCCAGAAAAAGAAGACCAAGGGAGAAGGAGAATTCTTTGAGTCAGACAAGGAGGAGAAAAAGGTGTTGCCTCAGCAAAAGAAAGATGACCAGAAAACTGTGGATGCTGCATTGTTAAAATCCATTGAGAGTGTTCCAGACCTCAAGACTTATCTTGGTGCCAGGTTTTCTCTTAAGGCAGGTGTGAAGCCGCACGAGCTAGTCTTTTAG 705 0.4397 MAPKKERTPRVTRNPDLIRGIGKFSKSQMYHKRGIWAIKAKNGGVLPRHDPKPKPESPAEKPPKFYPADDVKIPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNFDDKYFSKESQKKKTKGEGEFFESDKEEKKVLPQQKKDDQKTVDAALLKSIESVPDLKTYLGARFSLKAGVKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05100 234 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Trre7g05100 234 PANTHER 60S RIBOSOMAL PROTEIN L6 5 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Trre7g05100 234 MobiDBLite consensus disorder prediction 173 195 - -
Trre7g05100 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Trre7g05100 234 MobiDBLite consensus disorder prediction 45 70 - -
Trre7g05100 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Trre7g05100 234 MobiDBLite consensus disorder prediction 41 70 - -
Trre7g05100 234 Gene3D - 88 172 IPR014722 -
Trre7g05100 234 CDD KOW_RPL6 82 234 IPR041997 -
Trre7g05100 234 FunFam 60S ribosomal protein L6 88 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05100 Trre-Chr7 57711109 57712761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05100 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.603 8.67e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05100 K02934 - gmx:100784101 409.838