Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05098 ATGGATGATGATTTTTTTGATGATATTGCTCCTATTGTTCCTACTGCACGTGCTAAACCAGGTACAAGGTTTGCGCCGAAGGCAAAATCAAAATCGAAACAATCAGTTCAAAAGAATGTATCTGCGTCATCAGAAAATGCAATTTCATCTAAAGAGGGGAACAATGTGCTTGTTGATTCATCAACCACTCTCAAAGAATGTGGAGGAATTTCTCAGAATGAATCTCATAATGTAGTTGCTGCAAGTTCCTCAATTGAAGAACCTATAAGGTCTGGTCAAAATCCTGATATCGATGTCAATAACGTAACAGCACGACCAGTTCAGCCTGCTAATGCTGTAGAGAGTGTATTGAATAGTGTGGCTGCTCCATCTACTAATTGCGCAACCATAGGTAGGAACAAAGAAGTGGCTGTAAATGGAGAAGGTTCATTTCTTGATAGCAACAAGAGTTTGGAAGTAATTGATAATTCATTGGAAGTTAGCCTAAACGTGGGCTTCAAAAGTGCTTCAGCCGACAGTAACACTGGAATATCTGAGAGCAACATCCATTCAAATTTTGAGTTTGGAGAAATGCCACAGGTCTTGTCTTCGGAATTTGAGCTTGATCCTTTCAGCGATGATGTCCTCCCTGATCCCAGGCCCGGCACTAGGAATGCCAAAAAGTTTCAACCCAAGATTAAGCCACGGCCTAGAGTCAGCAATACACCAGCTACTGGTTCTGCTTCATCCGGTATTCCATTCTCTGAAGACAATAGAAGCATGGAAGCAGTTATTCCTTCTCATCCAGATTCCCTGAATGCTATGACATCAGAGGCTGTAGTCCATGATGGAACTAGAGATTTGCCTTCTAGCTTTGGTAAACCAGCTGCAGAGACTGCAGATATTTTTTCCGGGCTAGAATCACTTGATGACATTCTCAACCCAGCTGCAACTGGAAAACCAGATCTTAAATCTTTCAATGTGAAGGGTGCAGAGGAAAATTTTGTCCTTCCAGGAGATGATAGCAAAAGTAGGACAGAAACACAGGAAGGCGCTGACTTGAATCCTGACTGCCCAATTGACAATGTCTATGATTATCAATCCATGAAATCAGCCACAGATCCAACGTCTGAAATTCCAAGGCAGGAAGGGTTGACAAATTCTGCAGATAGTCCCACATTGGCTGATTTTTTGCAGCAAGACGGTACTGGAGAGAAAGAAGATGCTAATGAGAGAAAAAAATCTGTAAGGAAGAATAAAAGATCGTCTAATGCTGGTGTGGAAGATAAAGGTGGTAAAACCTCAAAGAAGCCGAGAAAACAATCAGTTCGTAAACCTGCTAAAAACACATTGAATGAGCCTGTTCAGGATGATGATGATGTCCTCGACCCTCCTTATGAGTTTGATGGAGATGAACTTCAAGAAAATGACGACGAGGATGAAGTGGATAATTCATCCAAGAAAAGGACATCAACAAGTTCAAAGAAGAAATCTGTGGCTAAAAATGGAAAAACATCTAAAAAACGCAAGAAGGCTAATGATGATTTAGACAAGGTTACTGAAGAACCTCCTAAAAAGTTCTCACATTCATCTCGGCGTAGAAAAAGATGTGTGGACAAGGCTCTGTTGGATGATGACTATCTTGATCAACGAACATTACCTCTTAGGGATATTATTTTACTTGCTGAACATAAGGAGCGATTGGCAAAAAAGGAGGCAACAACTACTAATACATCTTCCACCAATCAAAGCGATGGGATTGGAGATTTTCGTCATGAGGCTGATGCTAACAATGAAGAGGAGTTTTATGGGTCAGATGATGGTTATAGAGACCCATATGATGGTCAATATCAAGCCAGTGAAAACATTACATCAACTGCTCCTTTATTGAATTACCAGTCATTCATGGACAAGGCACCTAGGGGAAAATGGTCAACAGGAGATACTGAAAAGTTTTATGAGGCTATTAGGCAGTTTGGCACAGATTTTACTATGATACAGCAGCTTTTCCCTGATAAAACACGTCATCAAATTAAGTTGAAGTACAAGAAAGAAGAGCGGCAACATCCTTTACTGTTATCTGATGCCGTGAATAATCCTACAAAAGATCTCTCTTTATTTAAATTGGTGATTGAGAGACAGATTCAAAAGTCTAAGGAAGAACAAGATGCCGCTGGAGATGCCTCAGATTTAATGCCTGGGGAGGAGGTTGAGGACCCGACACCTGAAACTAATGAAGAGGTTGCAACAGCTCAGCAGGAGCAGGACCACATTAATGTTAAAGATCAGGATGATTCTATGGCATATCCAGTTCCAGGGCAATCTGACGACGACAACGATGATGATGATGAAGATCCGTTACTAAAATGGTCTCAGTATCAAAGTTCTATTTAG 2373 0.4088 MDDDFFDDIAPIVPTARAKPGTRFAPKAKSKSKQSVQKNVSASSENAISSKEGNNVLVDSSTTLKECGGISQNESHNVVAASSSIEEPIRSGQNPDIDVNNVTARPVQPANAVESVLNSVAAPSTNCATIGRNKEVAVNGEGSFLDSNKSLEVIDNSLEVSLNVGFKSASADSNTGISESNIHSNFEFGEMPQVLSSEFELDPFSDDVLPDPRPGTRNAKKFQPKIKPRPRVSNTPATGSASSGIPFSEDNRSMEAVIPSHPDSLNAMTSEAVVHDGTRDLPSSFGKPAAETADIFSGLESLDDILNPAATGKPDLKSFNVKGAEENFVLPGDDSKSRTETQEGADLNPDCPIDNVYDYQSMKSATDPTSEIPRQEGLTNSADSPTLADFLQQDGTGEKEDANERKKSVRKNKRSSNAGVEDKGGKTSKKPRKQSVRKPAKNTLNEPVQDDDDVLDPPYEFDGDELQENDDEDEVDNSSKKRTSTSSKKKSVAKNGKTSKKRKKANDDLDKVTEEPPKKFSHSSRRRKRCVDKALLDDDYLDQRTLPLRDIILLAEHKERLAKKEATTTNTSSTNQSDGIGDFRHEADANNEEEFYGSDDGYRDPYDGQYQASENITSTAPLLNYQSFMDKAPRGKWSTGDTEKFYEAIRQFGTDFTMIQQLFPDKTRHQIKLKYKKEERQHPLLLSDAVNNPTKDLSLFKLVIERQIQKSKEEQDAAGDASDLMPGEEVEDPTPETNEEVATAQQEQDHINVKDQDDSMAYPVPGQSDDDNDDDDEDPLLKWSQYQSSI 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05098 790 SMART sant 633 681 IPR001005 -
Trre7g05098 790 Pfam Myb DNA-binding like 627 711 IPR039467 -
Trre7g05098 790 MobiDBLite consensus disorder prediction 202 250 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 1 54 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 711 790 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 484 500 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 449 473 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 233 249 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 501 521 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 394 429 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 563 589 - -
Trre7g05098 790 Gene3D - 637 715 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 329 343 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 566 580 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 359 391 - -
Trre7g05098 790 MobiDBLite consensus disorder prediction 328 528 - -
Trre7g05098 790 CDD SANT 636 677 IPR001005 -
Trre7g05098 790 MobiDBLite consensus disorder prediction 28 54 - -
Trre7g05098 790 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 20 789 - -
Trre7g05098 790 SUPERFAMILY Homeodomain-like 635 683 IPR009057 -
Trre7g05098 790 ProSiteProfiles SANT domain profile. 636 680 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05098 Trre-Chr7 57703683 57709461 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre7g05098 Myb_DNA-bind_7 2e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05098 K15198 - gmx:100792788 599.356