Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05096 ATGAGCAACGCTTTCTCTTTGGTTTCACAACAATACAAAGCGTTGCTAAAAAAAAATATATTACTCTCATGGCGAAGTAAGAGATCAATTCTTCTCCAATTATTCTCACCAATTATCTTCATCTTCTTAATATTCGCCATTGATAAAGCAATTCAAGCTCAAACATCAACAACTTCAACATACAAATCAATTAAAAACCCTATTTCACAACCTTCACCATCAATTCCACCTTGCGAACACAAATTCTTCATTAAAAAACCTTGTTACGATTTCGTATGGAGTGGTGATACGAATCCTAAGTTTCGTACAATTGTTGATCGAATTATTAGTAATAATCCAGGTAGGGTTATACCTAATTGGAAAATTAAATCGTTTGGTGATAAATTTGAAGTTGATGAATGGCTTTTGAATAATCCTATGCAATGTCCTGGTGCGATTCATTTTGGTGAAAAGAATGATAGTGTTATTAGTTATGGAATTCAGACTAATTCTACTGTTCTTCAGAAACGTGGAAAGTATGAAGATCCTACTTTTTCTTTTCAACTTCCTCTTCAGCTTGCTGCTGAACGTGAAATTGCCAGATTCCTTATTGGAGACCCAAGCTTCAAGTGGAATGTGTTTTTGAAGGAATTCCCGCACCCATCTATGACTCCTCTCTCTGCTGTTAGAACAATTGGTCCATCATTTTTTCTTGCAATTGCTATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTGACAGAGAAAGAGCTTAAACTTCGCCAGGCAATGACAGTGATGGGGCTTTACGACTCTGCATACTGGTTATCATGGCTAACCTGGGAAACAGTTGTTACACTCATATCATCTATACTCATAGTTCTCTCTGGCATGATGTTTCAGTTTAGTTTCTTCTTGAAAAATAGTTTCGCTGTTCTGTTCTTTTTGTTCTTCCTATTTGAACTCAACATGACTGGGTTGGCCTTCATGTTATCGGCTTTCATTCGTAAATCATCTTCGGCAACAACAATCGGCTTCTTCATATTTATTATCGGCTTCGTGACACAGCTTGTCGTACAAGCCGGCTTTCCTTACTCATCTAGCTTCTCTGATACTTACCGAAATTTATGGTCATTGTTTCCGCCTAATCCTTTTGCTCAAGCCCTGACTGTGCTTTCAGACGCTGTTTCAACCCCTGAAGATGATGGTGTTAGCTGGAGTAAACGGGGATCATGCACCGTTGACAACGATGACTGTGTGATGACAATTAATGATATTTATAAATGGCTTCTTGCTACATTCTTTTTGTGGTTCGTTTTGGCCATGTACTTTGACAATATAATCCCAAATGCAATGGGTGTGAGGAAATCTGTGTTATACTTTCTAAATCCTCATTATTGGACAGGAAACGGAGGACAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTTAATTTCATCCCATCATGAAGAAAATAGTACACCAGACGATGAAGATGTCCGTGAAGAAGAAAATGCTGTGAGACAGCAACTAACACAAGGTGTGGTTGACACAAATGTTGCTGTTCAGGTACATGGCATTGTGAAGACTTATCCCGGTACATTTAGCATTGGTTGCTGCTGTAAATGTAAAAGGACTGCTCCTTACCATGCTCTTAAGGGCTTGTGGGTGAACTTTACAAAGGATCAGTTATTTTGTCTTTTAGGACCTAATGGAGCTGGAAAAACAACAATTATTAATTGTTTGACAGGGATAACTCCAGTGACTGATGGCGATGCATTGATTTATGGGCATTCAATCCGAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCGAACTCTTCGCTACTATTAAAGGCATGTCCCCAGCTTCTATAAAATCGATTACTCAGACATCATTGGCAGAGGTAAGACTCCTGGATGCAGCTAAAGTAAGATCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTTAGTGTTGCAATTGCTCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGGAGACATGTGTGGGACATAATAGAAAATGCAAAAAAAGGGCGTGCCATTATTCTCACAACACATTCTATGGAAGAAGCTGACATTCTAAGTGACCGAATAGGAATCATGGCAAAGGGAAGACTCCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTCGGTACTGGTTTTATTGCTAATATTAGCTTCTATGGAAACAATAATGAACACAGTCCTCCAAATAGTGATGCAATATCAGCAAGACATCGTGAGGCTGTGAAGGAATTCTTTAAGAATCGTTTAGATGTAGTACCAAAAGAGGAGAACAATAACTTTCTAACTTATGTGATTCCTCATGAAAGAGAGGCGCTCCTTACAAATTTTTTTTCGGAACTCCAAGATAGAGAAGAAGAGTTTGGCATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAGCTAGAAAGTGCTACAGCTGAAGGGAGCTTAGTGACTTTGACCTTGACATCTGGAGAGTCTGTGGAGATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAATATCCCACAGGTTTTATGGTAGAAGTATACTGGGAACAAGATGACACCGGTGCCCTTTGTGTTGCTGGCCACTCGCAGAAAGCTCCAATTCCTCAAAATATTCAACCAATATCATCTGCTACTTCAAGACATCGCCGGTCAGGGTCAGTTCACGGGGTTGTGATTGATCCAAGTCAAGTTACTTCTGTCAATTTTCAGTGA 2883 0.3975 MSNAFSLVSQQYKALLKKNILLSWRSKRSILLQLFSPIIFIFLIFAIDKAIQAQTSTTSTYKSIKNPISQPSPSIPPCEHKFFIKKPCYDFVWSGDTNPKFRTIVDRIISNNPGRVIPNWKIKSFGDKFEVDEWLLNNPMQCPGAIHFGEKNDSVISYGIQTNSTVLQKRGKYEDPTFSFQLPLQLAAEREIARFLIGDPSFKWNVFLKEFPHPSMTPLSAVRTIGPSFFLAIAMFNFVLQMSSLVTEKELKLRQAMTVMGLYDSAYWLSWLTWETVVTLISSILIVLSGMMFQFSFFLKNSFAVLFFLFFLFELNMTGLAFMLSAFIRKSSSATTIGFFIFIIGFVTQLVVQAGFPYSSSFSDTYRNLWSLFPPNPFAQALTVLSDAVSTPEDDGVSWSKRGSCTVDNDDCVMTINDIYKWLLATFFLWFVLAMYFDNIIPNAMGVRKSVLYFLNPHYWTGNGGQKVKEGGVCSCLISSHHEENSTPDDEDVREEENAVRQQLTQGVVDTNVAVQVHGIVKTYPGTFSIGCCCKCKRTAPYHALKGLWVNFTKDQLFCLLGPNGAGKTTIINCLTGITPVTDGDALIYGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLELFATIKGMSPASIKSITQTSLAEVRLLDAAKVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNNEHSPPNSDAISARHREAVKEFFKNRLDVVPKEENNNFLTYVIPHEREALLTNFFSELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESATAEGSLVTLTLTSGESVEIPIGARFVGIPGTESAEYPTGFMVEVYWEQDDTGALCVAGHSQKAPIPQNIQPISSATSRHRRSGSVHGVVIDPSQVTSVNFQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05096 960 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 515 761 IPR003439 GO:0005524
Trre7g05096 960 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 490 857 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trre7g05096 960 FunFam ABC transporter A family member 2 505 769 - -
Trre7g05096 960 Gene3D - 505 765 IPR027417 -
Trre7g05096 960 SMART AAA_5 554 738 IPR003593 GO:0016887
Trre7g05096 960 CDD ABC_subfamily_A 515 749 - -
Trre7g05096 960 ProSitePatterns ABC transporters family signature. 663 677 IPR017871 GO:0005524|GO:0016887
Trre7g05096 960 Pfam ABC-2 family transporter protein 27 436 IPR013525 GO:0016020|GO:0140359
Trre7g05096 960 Pfam ABC transporter 546 690 IPR003439 GO:0005524
Trre7g05096 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 743 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05096 Trre-Chr7 57692551 57698987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05096 558 780 Calmodulin-binding Proteins AT2G36910 23.932 9.97e-10 60.8