Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05083 ATGGCAGGTAATAAGAGAAACCAAACAAGTCCTGTAGGAAGTCCAACATCAGGAAACATCTCAGACAGTTCATCCTCAAAAGAACAAGACAGGTTTCTACCAATTGCTAACGTAAGCCGTATAATGAAAAGAGCACTACCAGCAAATGCTAAAATATCAAAAGAAGCTAAAGAAACTGTTCAAGAATGTGTTTCTGAGTTCATAAGTTTCATTACTGGTGAAGCTTCTGATAAGTGTCAAAGAGAAAAGAGAAAAACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGTTTTGAAAATTATGTTGGTCCTTTGAAAGTTTATCTTAATAATTATAGAGAAACTGAAGGAGAAAAGAGTAATAATAATTCTTCTTCTTCTTCTATGGTTACTAGTACTAAACAAGATGATTATGATCTTAATAATTCTTTAATTGAAGTTAATCATGATGTTGTTGTTGGTGGTGGATTTTATTCTCAAGTTATTAATGGAAGGATAGTGGATGAAACAGAACATGCAATTGGTAGTGGTAATAGAATCATGCCACCAAACCTTCGTTATAGGGTTGAATGGTAG 585 0.335 MAGNKRNQTSPVGSPTSGNISDSSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSNNNSSSSSMVTSTKQDDYDLNNSLIEVNHDVVVGGGFYSQVINGRIVDETEHAIGSGNRIMPPNLRYRVEW 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05083 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre7g05083 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Trre7g05083 194 Gene3D Histone, subunit A 19 151 IPR009072 GO:0046982
Trre7g05083 194 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre7g05083 194 MobiDBLite consensus disorder prediction 1 32 - -
Trre7g05083 194 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Trre7g05083 194 SUPERFAMILY Histone-fold 29 149 IPR009072 GO:0046982
Trre7g05083 194 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Trre7g05083 194 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Trre7g05083 194 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05083 Trre-Chr7 57620412 57620996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05083 24 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 89.000 5.77e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre7g05083 CBFD_NFYB_HMF 9.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05083 K08065 - gmx:100797721 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05083 7 57620412 57620996 Trre7g05083 7 57620412 57620996 ECH