Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05081 ATGGCAGAAAACAACATTGCAACAAAATCCAACACACGGAAGAGAAAAATTGGTGAAATCAAGAAATTGGAAGATCCAAACAAGTTTGCCATGTCGTTTTCAAAATGCAAAATCGGTCTTTTCAACAAAGTAACAGAGCTCTCTATTTTGTGCAAAGCAAAAACCGCACTCATTGTCATATCACCCGACAAGGAGCTCTATGCATGTGGCTATCCTAATTGCGACACCGTCATTCAACAATTTTTGACAGGAAAAGGCACCGTTGAAGATGGTGAGATAAAGAAGCATGAGGAGATTGTTGAAACCCTAAGGCTTGAATATGAGACAATTGAAGATAAACTTAAAGAAGAAGAGAAGAATTTGAAAGCTATTATCGATGAAAAAAATAAGAGCGATTCTATTTTTCCTATTTGGTGGGGTGATTCTATTGATGATATGGATTTAGCTTCTCTCGAGGAATTTACGTCGTCTTTACAAAATTTGAAGCTTAATTTAGGTTCCATCATTGACCAAAAAAGTCAATGTTTTAACCCATTGCCAACTTTGATGTAA 552 0.3605 MAENNIATKSNTRKRKIGEIKKLEDPNKFAMSFSKCKIGLFNKVTELSILCKAKTALIVISPDKELYACGYPNCDTVIQQFLTGKGTVEDGEIKKHEEIVETLRLEYETIEDKLKEEEKNLKAIIDEKNKSDSIFPIWWGDSIDDMDLASLEEFTSSLQNLKLNLGSIIDQKSQCFNPLPTLM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05081 183 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre7g05081 183 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre7g05081 183 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre7g05081 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 68 IPR002100 GO:0003677|GO:0046983
Trre7g05081 183 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Trre7g05081 183 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre7g05081 183 Gene3D - 25 111 IPR036879 GO:0003677|GO:0046983
Trre7g05081 183 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre7g05081 183 PANTHER MADS BOX PROTEIN 15 165 - -
Trre7g05081 183 Coils Coil 93 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05081 Trre-Chr7 57599996 57600547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05081 12 162 Type I MADS-box Gene Family AT5G60440 30.000 4.83e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g05081 SRF-TF 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05081 - - tpra:123896833 202.216