Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05063 ATGGATTCTTCATCTTCCCAATATGTTTCCACAAGAAGTTTTGGTATATATGATCCTTCCCATCAATTTACTATATGGGAAGATCATTTCAAGAATAATGGTGATTTAAGTTTATATGAACCTAACATGAAGTTAAATAATCAGTCAGAGGATGCTTCTTTTGGAATATTGGGAACATCTATCAAGTATGACCAACAACCTAACAAACTTACTGATAAGATGCAAAGACGTCTAGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATACAACAGTTAGAATCGTGTCGTTTGAAGCTAGTACAGGTAGAGCAAGAGCTAGATAATACAAGACAACAGGGATTGTATATTGGTGGTGGATTGGATTCTAACAATGGTTTTGCTGGTTCCGCAAATTCAGAAATAACAACTTTTAAGATGGAGTATGAACATTGGGTGGAAGAGCAAAACAGACAAATCTTGGAATTGAATAGTGCTTTAAGTGCTCATAAAAGTGACATACAGATAGAAGAACTTGTAAATGGCATGATGAATCACTATTTCAAACTCTTTTGCATGAAATCTGATGCTGCAAAAGTAGACGTTTTCTATGTTATCACCGGCATGTGGAAAACAACGTCCGAACAATTTTTCTTATGGATTGGAGGTTTTCGCCCCTCCGAACTTCTAAAGGTTCTGGTCCCTTTGATTGAACCATTGACAGAAGAACAGCGGTTCAATGCCTATAATCTTGAAAAATCATGTCGGCAAGCAGAAGATGCACTTTCACTAGGTATGGAAAAACTCCAGGGAATGCTTACCGAAACAGTAGCAGCAGGAGAAGCCATTGAAGGAATTAACACTCCACATATGGATATTGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTCAACCAGGCTGATCATCTACGACAGGAAACCTTGCAGCAGATGTCTAGAATACTTACCATACGTCAAACTGCTCGATGGCTGCTTGTTTTGGGCGAGTATTTTCAACGCCTAAGGGATTTAAGCAAGGTTTGGGCCAATCGTGGCCGTGAACCTGCTTAG 1071 0.3959 MDSSSSQYVSTRSFGIYDPSHQFTIWEDHFKNNGDLSLYEPNMKLNNQSEDASFGILGTSIKYDQQPNKLTDKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLVQVEQELDNTRQQGLYIGGGLDSNNGFAGSANSEITTFKMEYEHWVEEQNRQILELNSALSAHKSDIQIEELVNGMMNHYFKLFCMKSDAAKVDVFYVITGMWKTTSEQFFLWIGGFRPSELLKVLVPLIEPLTEEQRFNAYNLEKSCRQAEDALSLGMEKLQGMLTETVAAGEAIEGINTPHMDIAIERLEALASFVNQADHLRQETLQQMSRILTIRQTARWLLVLGEYFQRLRDLSKVWANRGREPA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05063 356 SUPERFAMILY Leucine zipper domain 73 106 IPR046347 GO:0003700|GO:0006355
Trre7g05063 356 Gene3D - 72 121 - -
Trre7g05063 356 SMART brlzneu 69 150 IPR004827 GO:0003700|GO:0006355
Trre7g05063 356 ProSiteProfiles DOG1 domain profile. 141 351 IPR025422 GO:0006351|GO:0043565
Trre7g05063 356 Coils Coil 92 119 - -
Trre7g05063 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 76 91 IPR004827 GO:0003700|GO:0006355
Trre7g05063 356 PANTHER TRANSCRIPTION FACTOR TGA9 3 354 - -
Trre7g05063 356 FunFam BZIP family transcription factor 72 121 - -
Trre7g05063 356 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 71 113 IPR004827 GO:0003700|GO:0006355
Trre7g05063 356 Pfam Seed dormancy control 159 233 IPR025422 GO:0006351|GO:0043565
Trre7g05063 356 Coils Coil 152 172 - -
Trre7g05063 356 Pfam bZIP transcription factor 72 101 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05063 Trre-Chr7 57517855 57520059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05063 1 355 Calmodulin-binding Proteins AT5G10030 60.274 1.14e-155 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre7g05063 DOG1 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05063 K14431 - gmx:100780003 503.827