Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g05054 | ATGGCACTCTCGTTCTCACTCTCTTCAAGCGTAACCGTTTCTAACCGTTTTCCTTCTTGTTGCATTTCGAAACTGAATAGTAAGATTTGTAATGGGTTCAATAAAGTGTTATGTTCGTCACGGAAGGATAAGAATCCGTTAGTTGGAATTGGTTTGGGGTTTGTAACGGCTATGGTTATGGGTTTAACGGCGTTAGATGCCGATGCAACGAGAATTGAATACTATGCTACTGTGGCAGAGCCAACGTGTGAGCTTAATTATGCTAAGTCTGGGCTTGGTTATTGTGATGTTGTTGAGGGTTTTGGTGATGAAGCTCCTCTTGGAGAGCTTATTATTATTCATTATACTGCGAGATTCGGCGATGGGATTGTATTTGATAGTAGTTATAAACGTGGTAGACCGCTCACTATGCGTATTGGGGTTGGCAAGGTAATAAAGGGATTGGATCAGGGGATTTTGGGGGGTGAAGGAGTACCTCCGATGCGGATAGGTGGGAAACGTTCGCTAATGATTCCTCCGCTGTTAGCATATGGCCCTGAACCTGCAGGGTGCTTCTCAGGTGACTGCAATATACCGGGCAATGCCACTCTTCTGTATGATATTAAATTTGTTGGTCTTTATACGGATGAGCAACACATGGACTGA | 645 | 0.4388 | MALSFSLSSSVTVSNRFPSCCISKLNSKICNGFNKVLCSSRKDKNPLVGIGLGFVTAMVMGLTALDADATRIEYYATVAEPTCELNYAKSGLGYCDVVEGFGDEAPLGELIIIHYTARFGDGIVFDSSYKRGRPLTMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRSLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYTDEQHMD | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g05054 | 214 | FunFam | Peptidylprolyl isomerase | 80 | 206 | - | - | |
| Trre7g05054 | 214 | Gene3D | - | 80 | 206 | IPR046357 | GO:0003755 | |
| Trre7g05054 | 214 | SUPERFAMILY | FKBP-like | 87 | 205 | - | - | |
| Trre7g05054 | 214 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 108 | 207 | IPR001179 | GO:0003755 | |
| Trre7g05054 | 214 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 105 | 203 | IPR001179 | GO:0003755 | |
| Trre7g05054 | 214 | PANTHER | PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC | 31 | 209 | IPR044183 | GO:0009507 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g05054 | Trre-Chr7 | 57429068 | 57430446 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g05054 | 84 | 208 | Calmodulin-binding Proteins | AT5G48570 | 36.508 | 3.49e-13 | 65.9 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre7g05054 | 7 | 57429068 | 57430446 | Trre7g05054 | 7 | 57429068 | 57430446 | ECH |