Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g05024 | ATGTCTCATCCAACAAAGTACGACGTGTTCCTGAGCTTCAGAGGAGAGGACACTCGAGACAAATTCACGAGTTATCTTTATGTAGAATTGCGTAGGAAAATGATTGAGACATTCATAGATAATAGACTTGGAAGAGGCGAAGAGATTTCACCAGCACTGTACAAAGCAATTGAAGAATCAAAGATTTATGTCGTCATTCTTTCAGAACATTATGCTTCTTCCGGATGGTGTTTAGCTGAATTGACAAAGATACTGGAATGTAAGGAGAAATATGGTAGGGAAGTGATACCCATCTTCTATGAGGTGGATCCATCAGATGTTAGGAATCAGAGAAAGAGTTACGAAGAAGATTTTTTGAAGCATCATCAACACCGATCCAAAGACAAAATAGATGCTTGGAAGGCTGCTCTAACTCAAGTTGCCAATCTCTCAGGCTGGGATTCACCAAAAACCAGACCAGAAAGCAGACTTGTTACAGATATTGTAAAAGATATTATGAAAAAATTGAATCATTGTTTCTTAATCAATTATGATGGAATGATTGGAATTGAAAAGCATGTAGAACAAATCCAATCTTTGTTGCTCCTTGAGTCGGCACCCGTTCGTACCATAGGAATATGTGGTATGGGAGGGCTAGGCAAATCAACAATTGCTAATGCAATCTATCGTAAACTCATACCTGATTTCAATTGTGGAAGCATCATTCTAAATGTTCAACATGAAATAGAAAAAGGTGGACTACAGGAAGTACGAAAAAAATATATATCACAACTTCTAGGGGAAGACATTACATCTTCCGGATTCAATTTTTTATTCAATCCAAGGCTTGAAAGGGAAAAGGTTCTCATTGTTCTTGATGATTTGAAAGATTCTGATCAACTTATAGATTTAATTGGAACACATGAAGACTTTGGTGAGGGGAGTAGAATCATTGTGACTAGTAGAGATAATCAAGTACTTCAGAATGCCAATGCCGATGAAATATATCAAGTTAGAGAAATGGATTTTCAAGATTCTCTACAACTCTTCTGTTTAAATGCCTTTAAACAAAACTATCCAATGGAAACTTACATGAGCTTATTAGAAAAGGTATTAAATTATGCTAAAGGGGTTCCATTAACTCTCAAAGTTTTGGGAAAATTTCTTCAGGGCAGGACAAAGATAATATGGGAAAGTGTGTTGCAAAACCTCGAAAAGTTTCCCCATTCAGAAACTTTCAAAGTGTTGAAGTTAAGTTATGATGGACTTGAGGATGAACAAAAGGATATATTTCTTGACATAGCTTGCTTCTATAGAGGACATTTGGAGAATGTTGTAGCACAAACATTGGATTGTTGTGGTTTCTCCGCTCACATTGGAATGGAAGTTCTCAAAGATAGGTGCCTTATATCAATTTCAGAAGGTAGAATTGTGATGCATGATCTAATTTATGAAATGGGACAAGGAATTGTTCGGCAAGAATGTGTCAATGATCCCGGAAAACGTAGTCGGTTGTGGAAGCATGAAGAAATTCATGATATTTTAAAAAAGAACAAGGGGACAGATGCAATCAAGTGCATATTCCTGGACGTATGCAAGATAAACAAAGTTCAACCACATGCCGAAACTTTCGAGAAAATGCATAATCTTAGAATGATCCAATTCTATAATTCGTCTGCCTTTCAGAGACATTCAAATGTGATCCTTAAAGCGCCTCTTAAGAGTTTTCCGGATGATTTAAAATTTCTTCGTTGGGATGGCTTCCCTCAAAGATCTTTGCCGCTAGATTTTTGTCCAGAAAATCTTGTTACACTTGATATGCCTCATAGCCATCTTGAACAACTTTGGGTCGGGGATCAGGCATTACCAAATTTGAAAAGGCTGAACCTTAGTTATTCCCAAAAGCTTATAGCAGTTCCAGACTTCTCTTTGTCTCCAAATATTGAAGAAATAATTCTGAGCCATTGTTCAAGTTTGGAAAAAGTTAACTCCTCGAGCGTCCTCGACAACCTGAACTGTTTATGTTTAAATGGTTGTATCAAACTTAAGAGTTTAAATCTTCCTAGCAATATTCTATCGAGATCTTCCGGATTAGTTGTTCTTCATGGTTGTCTCAACCTTAAGACACTTATAATCAATAGTGGAACTGAGGTGGTTCAATCAAACAGTTGTTCGCATTTTGATGTATTTTGGGACTACGAGGCAATACATGTTTCTGATGATGATGATTATGATGAAGAAGAAGAAGAACGAAAGAGTGTTATGGGGGGTTTTGGAAATGGGGAATACTCTTCATTAGCTTTTAGCCCGATTGATAATGTTGACATATATGAAAACGAAGAACCAGTGGACAATATATGCTTAATTAACATGAAAGTGAGGATAGACACTATGCCCTCGCTGTTTACAGGTATCAATCACCTTTGTTGGTTAGATATTTCCAATTGTGAGTCCCTAACATGCCTACCATCTGAACTTTTCAATTTGAATTTTTTAAGAAGACTTTATCTCGGTGGTTGTTTAAATTTGAAAGCCTTGCCTGAAATCGAGGAGACTATGGAAAATCTAACAGTGCTCATATTAGACAAAACAGCAATAAAAGAACTACCTTCATCTTTGCACCATTTGGTCGTGCTTGAAGAATTGAGCTTGCAAATGTGCACAAGGCTTAAGACTATTCCATCTTCCATTGGAAGTCTCAGCAAACTCCTCAAGTTAAACCTTACCTGCTGTGAATCACTTGAAACTTTTCCAAGCAGCATTTTCAAATTGAAGTTGACAAAACTCGATTTGCAAGGTTGTTCAATGCTAAAGACCTTTCCAGAGATCTTGGAGCCTGCAGAAAGTTTTGTGCACATTAACTTAACAAAAACAGCAATTCAACATTTGCCGTCATCATTGGAGTATTTGGTTGGGTTGAAAACCTTGTCCCTGAATCTTTGCAGTAATCTGGTGTCGCTTCCAAATAGCATTTCTAAACTAAATCATCTATCTGTGCTTGACTGTTCCGGCTGTTGCAAATTAACAAAAATCCCAAATAACATTGGTAGCTTGTCATCATTGACGGAACTTTCGTTGCAAGAAAGCAGTATTATGAACCTTCCTGAGAGTATTTCTCATCTCTCAAGTTTGAAATCACTTGACTTAAGTGATTGCAAATTGCTTGACTGTATCCCAGAGCTTCCACCGCATCTAAACCAATTTTTGGCATTTGATTGTTCATCCATTAATAGAGTGGTGCCAAATTCAAGGTCGAAACTCCTGTCTGATTCCAAAGAAGGTACCTTCAAATTTCATTTTACCAATAATCAGCAACTAGATGAAACTTCTTGGAAAAATATTGGGTTTGAAGCATGGACTAAGATAACTAATGATGCATATAGGTCAGTGTTCTTCAGCTTTCCTGGAAGTGCAGTTCCTAGTTGGTTACCTTACCGTTGCCAGGGACGTTCAGTAACCATGGAAAAAAATTCTCCATTTTTTTTGGGCGAAAACAGGCTCGTTGGATTTGCTCTGTGTGTCGTTTTTAGAGGTGTAGATATGGAACACACAGAAACAAGAGATAGTAGATTTTTATATAAACTAACTTTTGAATCCAATGGTAAAACATTAACACTTCCCGGCTATCAGCTAACAAACTCTTTCAACTGGAAGCGTCAACACAGGTATTTCGTTCAAGATCACACGTTCCTATGGAAATATCAATTCGACTTCACAAGACTTGGCAACAAGCTCTTTCATGCTCACAACTTCACTTTCAAGATCCACGATTTTCCCTCAAATTTTAGATCAACCGAAACAGTGAAAGAGTGTGGAATATGTCCTCTGTATACCATACAAAGCGATGAAATGGTCTGA | 3837 | 0.3727 | MSHPTKYDVFLSFRGEDTRDKFTSYLYVELRRKMIETFIDNRLGRGEEISPALYKAIEESKIYVVILSEHYASSGWCLAELTKILECKEKYGREVIPIFYEVDPSDVRNQRKSYEEDFLKHHQHRSKDKIDAWKAALTQVANLSGWDSPKTRPESRLVTDIVKDIMKKLNHCFLINYDGMIGIEKHVEQIQSLLLLESAPVRTIGICGMGGLGKSTIANAIYRKLIPDFNCGSIILNVQHEIEKGGLQEVRKKYISQLLGEDITSSGFNFLFNPRLEREKVLIVLDDLKDSDQLIDLIGTHEDFGEGSRIIVTSRDNQVLQNANADEIYQVREMDFQDSLQLFCLNAFKQNYPMETYMSLLEKVLNYAKGVPLTLKVLGKFLQGRTKIIWESVLQNLEKFPHSETFKVLKLSYDGLEDEQKDIFLDIACFYRGHLENVVAQTLDCCGFSAHIGMEVLKDRCLISISEGRIVMHDLIYEMGQGIVRQECVNDPGKRSRLWKHEEIHDILKKNKGTDAIKCIFLDVCKINKVQPHAETFEKMHNLRMIQFYNSSAFQRHSNVILKAPLKSFPDDLKFLRWDGFPQRSLPLDFCPENLVTLDMPHSHLEQLWVGDQALPNLKRLNLSYSQKLIAVPDFSLSPNIEEIILSHCSSLEKVNSSSVLDNLNCLCLNGCIKLKSLNLPSNILSRSSGLVVLHGCLNLKTLIINSGTEVVQSNSCSHFDVFWDYEAIHVSDDDDYDEEEEERKSVMGGFGNGEYSSLAFSPIDNVDIYENEEPVDNICLINMKVRIDTMPSLFTGINHLCWLDISNCESLTCLPSELFNLNFLRRLYLGGCLNLKALPEIEETMENLTVLILDKTAIKELPSSLHHLVVLEELSLQMCTRLKTIPSSIGSLSKLLKLNLTCCESLETFPSSIFKLKLTKLDLQGCSMLKTFPEILEPAESFVHINLTKTAIQHLPSSLEYLVGLKTLSLNLCSNLVSLPNSISKLNHLSVLDCSGCCKLTKIPNNIGSLSSLTELSLQESSIMNLPESISHLSSLKSLDLSDCKLLDCIPELPPHLNQFLAFDCSSINRVVPNSRSKLLSDSKEGTFKFHFTNNQQLDETSWKNIGFEAWTKITNDAYRSVFFSFPGSAVPSWLPYRCQGRSVTMEKNSPFFLGENRLVGFALCVVFRGVDMEHTETRDSRFLYKLTFESNGKTLTLPGYQLTNSFNWKRQHRYFVQDHTFLWKYQFDFTRLGNKLFHAHNFTFKIHDFPSNFRSTETVKECGICPLYTIQSDEMV | 1278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g05024 | 1278 | ProSiteProfiles | TIR domain profile. | 5 | 169 | IPR000157 | GO:0007165 | |
| Trre7g05024 | 1278 | SUPERFAMILY | L domain-like | 781 | 1066 | - | - | |
| Trre7g05024 | 1278 | Gene3D | Ribonuclease Inhibitor | 501 | 728 | IPR032675 | - | |
| Trre7g05024 | 1278 | Pfam | TIR domain | 6 | 172 | IPR000157 | GO:0007165 | |
| Trre7g05024 | 1278 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 7 | 706 | IPR044974 | GO:0006952 | |
| Trre7g05024 | 1278 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 3 | 171 | - | - | |
| Trre7g05024 | 1278 | SUPERFAMILY | L domain-like | 518 | 706 | - | - | |
| Trre7g05024 | 1278 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 2 | 146 | IPR035897 | - | |
| Trre7g05024 | 1278 | CDD | ABC_ATPase | 204 | 333 | - | - | |
| Trre7g05024 | 1278 | Gene3D | Ribonuclease Inhibitor | 778 | 918 | IPR032675 | - | |
| Trre7g05024 | 1278 | Pfam | NB-ARC domain | 184 | 403 | IPR002182 | GO:0043531 | |
| Trre7g05024 | 1278 | SUPERFAMILY | "Winged helix" DNA-binding domain | 405 | 509 | IPR036390 | - | |
| Trre7g05024 | 1278 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 169 | 427 | IPR027417 | - | |
| Trre7g05024 | 1278 | SMART | AAA_5 | 200 | 324 | IPR003593 | GO:0016887 | |
| Trre7g05024 | 1278 | Gene3D | Ribonuclease Inhibitor | 919 | 1077 | IPR032675 | - | |
| Trre7g05024 | 1278 | Pfam | C-JID domain | 1127 | 1271 | IPR045344 | - | |
| Trre7g05024 | 1278 | PRINTS | Disease resistance protein signature | 203 | 218 | - | - | |
| Trre7g05024 | 1278 | PRINTS | Disease resistance protein signature | 368 | 382 | - | - | |
| Trre7g05024 | 1278 | PRINTS | Disease resistance protein signature | 275 | 289 | - | - | |
| Trre7g05024 | 1278 | PRINTS | Disease resistance protein signature | 613 | 629 | - | - | |
| Trre7g05024 | 1278 | Gene3D | - | 334 | 417 | IPR042197 | - | |
| Trre7g05024 | 1278 | Gene3D | - | 169 | 330 | IPR027417 | - | |
| Trre7g05024 | 1278 | Pfam | Leucine Rich Repeat | 594 | 613 | IPR011713 | - | |
| Trre7g05024 | 1278 | Gene3D | - | 4 | 168 | IPR035897 | - | |
| Trre7g05024 | 1278 | SMART | till_3 | 6 | 143 | IPR000157 | GO:0007165 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g05024 | Trre-Chr7 | 57102566 | 57110242 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g05024 | 801 | 969 | WRKY Transcription Factor Family | AT4G12020 | 34.911 | 6.95e-17 | 85.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g05024 | - | - | tpra:123916959 | 1372.07 |