Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05001 ATGGCTCACAACAACATGCGCCATTTTCATCATCCTAATCAATTTGATATTCAACAAATTTTATCAGAAGCACAATATAGATGGCTACGTCCACCTGAAATTTGTCAAATTCTCACTAATCATAACAACTTTCAGATTGCTTCTGAACCTTCATATATGCCTCCAAGTGGTTCACTTTTCCTATTTGATCGGAAAGTGACGCGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGAAAAAAGATGGAAAAACTGTCAGGGAAGCTCATGAAAGATTAAAGGTTGGAAGTGTGGATGTATTACACTGCTACTATGCTCATGGAGAACAAGATGATAATTTTCAAAGACGAACTTACTGGATGCTTGAGGAGGAACTCTCACATATTGTTCTAGTCCACTATCGCGAAGTGAAGGGAACCAAGACAACTTTAATATGCGCCAAAGAAAATGAAGAATCTCATCCTCATGCTCAACAAACATACAAAGTTATGTCCAGCACAGAGATGGAGACTTCTTTACTGTCTAGCACGAACACTGCACAATCATCAGAATATGAAGAAACTGAATCAGCATTCAATAGCCATGCAAATTCAGATTTCTACTCTTTTCTTGAGCTGCAACACCCTGTTGTTCAGAAGATTAAAGCTCAAATCGCTGATTCTAGCTGTTCTCTACCATTCAAAGACGATGATCAACAAAGGTTACCTGTCATTCCTAAGGTGGATTATATCTCACTCAGTCAAGCTAATGAAACCAAATGCATTAATAATGTGGAATTGACATGTGAACTCTCAAAAATCCTTGGCTTCTCATCATGCCAAGATACCTTAGAAAATCATTCTGGAAGTCATAATGTGCTGTTTCAACCTTCTTTTCCTGAAACACAACACAATAACATGGGAATAAATAGTACTTCTCAAGGATATGAGCCTTCTGGTTTTATTCCTTTAAGGGCGTCCACTTGGCCCAACGATAGTGCGTATTCGAGCTCGACGTGTGAGGTTAGTTATAGCGACAATGAGAAGGAAGTTAATGAAGTTGATTTTCAACAAACCTTGGAACAGTTCCTTATTCATCCAACCCAACAACACAAGGTTCTTATGCGGAATAGCCCTCACGAAAAACTTTTAAAAGCAGAAGAGATAAAATCGGTAGAGGTCGATAGAAGCCTAGATGGAATACAAGCCACTCATTTCACTTCAAAGAAGACTCTATTAGATGTATCTATGGCAGAAGAGGGCCTGAAGAAGCTCGACAGTTTCAATAGATGGATGAGTAAAGAACTGGGAGACGTGGAAGAATCGAGCAAAAAATCAACTTCTAGTGCTTATTGGGATACAGTTGAAACCGAAAATGGTGTTGACAGTAGAACTATTCCTTCCCTAGTGCACCTGGAAAACTATGTACTAGATCCATCTATTTGCTATGATCAGCTTTTCAGCATCATCGATTATTCCCCATGTTGGACATTTGAAGACTCAGAAATTAAGGTTATCATTTCAGGGCGATTCTTAAAAGGTCAAAATGAAGCAGAAGATTGTAAATGGTCATGCATGTTTGGTGAGGTAGAAGTGCCAGCGGAGATAATCGGGAATGGTATTCTCTGTTGTCATACTCCACCACACAAGTCTGGCAGGGTTCCTTTCTATGTAGCATGTTCTAATAGGTTGGCATGCAGTGAAGTGCGCGAATTTGATTTCCGAGTCAATTGTACTCAAGATGTCAACATTGCAGGCGAGAACAGAAGCAACAACACTTTCGATACTTTTAATAAACGATTTGGAGAATTGTTGTCCCTGGAGCATGACTTCCCTCAGAGTTTAGATTCAGTTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCATTGTTTAGGAGGGAGAATGATGAATGGGACAAACTACTGAAATTTACTCTCGAGAAAGAATTTTCTCCGGAGCTTGTACAGGAGCAGCTGCTTGAAAATCTTCTCAAAGATAAGTTGCATGCATGGCTCCTTCGGAAAACAACCGAAGATGGGAAAGGTCCAAATGTATTAGATGAAGGTGGGCAAGGTGTGCTTCATTTAGCAGCTGCTCTTGGCTTCGATTGGGCCTTAGAACCAACAATAGTTGCTGGTGTGAATGTGAACTTTCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCCGCGTTTTGTGGCAGGGAACGCACTGTTGCTTCCCTAATATCTCTTGGGGCAGCGCCAGGAGCACTTACTGATCCATGCCCACAACATCCTTCTGGTAGAACACCGGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCAGGTTATCTTGCAGAATCTTTCCTAAGTGCACAACTCAAGTCTATTGATTTGAAAAGAGGGGCAGGAGAAAGTCTTGGAACAAAAATAGTACAAAGAGTCCAAGAACAAAACGCTGCTCAACTTAACAATGAAGGAATCTCACATGAACTGTCACTGAAAGATTCACTGGCTGCAGTGTGCAATGCAACTCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTTCAATCATTCCAGAGAAAACAACAAAAGGAATATGGTGATGATAAATTTGGAATATCTGATGAACGCGCTCTTTCACTAATAGCAGTGAATGCGAAGTCACATAAGTCTGGACAACGTGATGAGCCTGTTCATGTTGCTGCAACACGAATTCAGAACAAGTTCCGCAGTTGGAAAGGCAGAAAAGATTTTTTGATTATTCGACAGCGTATTGTAAAAATACAGGCTCATGTCAGAGGTCACCAGGTTAGGAAAAACCATGTGAAGATAATTTGGTCTGTTGGGATCATGGAAAAGGTTATATTACGTTGGCGTCGGAAAGGTAGTGGTTTGCGTGGGTTTAAATCGGAGACTGTTTCTGAGGGAACTGTGGTACAAGGTGCATCATCTTCCACTGAGGATGACTATGATTTTCTGAAAGAAGGCAGGAAGCAAACTGAGAAAAGGTTGGAGAAAGCCCTTGCTAGGGTGAAGTCAATGGCACAATATCCAGATGCAAGAGACCAATATCACAGGCTATTGAATGTTGTAACTGAGATACAAGAAAATCAGATAAAGCAAGATTGGAATTTTTACAATTCAGAAGAAACAAGACAATTCGATAACCTCACTGATCTTGAAGCGTTGTTAGATGAAGATACTTTCATGTATACAGCTACTTAG 3207 0.4041 MAHNNMRHFHHPNQFDIQQILSEAQYRWLRPPEICQILTNHNNFQIASEPSYMPPSGSLFLFDRKVTRYFRKDGHNWRKKKDGKTVREAHERLKVGSVDVLHCYYAHGEQDDNFQRRTYWMLEEELSHIVLVHYREVKGTKTTLICAKENEESHPHAQQTYKVMSSTEMETSLLSSTNTAQSSEYEETESAFNSHANSDFYSFLELQHPVVQKIKAQIADSSCSLPFKDDDQQRLPVIPKVDYISLSQANETKCINNVELTCELSKILGFSSCQDTLENHSGSHNVLFQPSFPETQHNNMGINSTSQGYEPSGFIPLRASTWPNDSAYSSSTCEVSYSDNEKEVNEVDFQQTLEQFLIHPTQQHKVLMRNSPHEKLLKAEEIKSVEVDRSLDGIQATHFTSKKTLLDVSMAEEGLKKLDSFNRWMSKELGDVEESSKKSTSSAYWDTVETENGVDSRTIPSLVHLENYVLDPSICYDQLFSIIDYSPCWTFEDSEIKVIISGRFLKGQNEAEDCKWSCMFGEVEVPAEIIGNGILCCHTPPHKSGRVPFYVACSNRLACSEVREFDFRVNCTQDVNIAGENRSNNTFDTFNKRFGELLSLEHDFPQSLDSVSVNEKSQLRSKISSLFRRENDEWDKLLKFTLEKEFSPELVQEQLLENLLKDKLHAWLLRKTTEDGKGPNVLDEGGQGVLHLAAALGFDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSAQLKSIDLKRGAGESLGTKIVQRVQEQNAAQLNNEGISHELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEYGDDKFGISDERALSLIAVNAKSHKSGQRDEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNHVKIIWSVGIMEKVILRWRRKGSGLRGFKSETVSEGTVVQGASSSTEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTEIQENQIKQDWNFYNSEETRQFDNLTDLEALLDEDTFMYTAT 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05001 1068 SUPERFAMILY E set domains 482 567 IPR014756 -
Trre7g05001 1068 ProSiteProfiles CG-1 DNA-binding domain profile. 17 143 IPR005559 GO:0003677
Trre7g05001 1068 FunFam Calmodulin-binding transcription activator 2 647 794 - -
Trre7g05001 1068 FunFam Calmodulin-binding transcription activator 2 891 939 - -
Trre7g05001 1068 SUPERFAMILY Ankyrin repeat 674 780 IPR036770 -
Trre7g05001 1068 Gene3D Immunoglobulins 475 572 IPR013783 -
Trre7g05001 1068 Coils Coil 984 1004 - -
Trre7g05001 1068 Gene3D - 891 939 - -
Trre7g05001 1068 ProSiteProfiles IQ motif profile. 893 921 IPR000048 GO:0005515
Trre7g05001 1068 FunFam Calmodulin-binding transcription activator 2 475 572 - -
Trre7g05001 1068 SMART CG_1_2 20 138 IPR005559 GO:0003677
Trre7g05001 1068 SMART iq_5 891 913 IPR000048 GO:0005515
Trre7g05001 1068 SMART iq_5 914 936 IPR000048 GO:0005515
Trre7g05001 1068 SMART ANK_2a 757 786 IPR002110 GO:0005515
Trre7g05001 1068 SMART ANK_2a 718 747 IPR002110 GO:0005515
Trre7g05001 1068 ProSiteProfiles Ankyrin repeat profile. 718 750 IPR002110 GO:0005515
Trre7g05001 1068 Pfam CG-1 domain 23 136 IPR005559 GO:0003677
Trre7g05001 1068 ProSiteProfiles Ankyrin repeat region circular profile. 718 743 - -
Trre7g05001 1068 Pfam Ankyrin repeats (3 copies) 690 780 IPR002110 GO:0005515
Trre7g05001 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 885 941 IPR027417 -
Trre7g05001 1068 Gene3D - 645 804 IPR036770 -
Trre7g05001 1068 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 1031 - -
Trre7g05001 1068 ProSiteProfiles IQ motif profile. 915 939 IPR000048 GO:0005515
Trre7g05001 1068 Pfam IQ calmodulin-binding motif 917 935 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05001 Trre-Chr7 56955611 56961186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05001 61 291 CAMTA Transcription Factor Family AT2G22300 43.478 1.48e-47 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre7g05001 CG-1 1.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05001 K21596 - gmx:100798875 1524.99