Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04997 ATGCATAATCACACCGAAATTACACAACAACCAAATAATACAAACATTCCTCTTCACAACCTCAACGAACTAAGCACCAAAATGGATTCTATTCAACACTACATATCCCAAACCATCAACACCAACACTCTTCTCCCCAAACATCAATTAGACACACTCTCCAACCAAATCTCAAACACCATTCGCCAAGTCATAATTAATGCAACCGCTCTTCTCGCCACATGTCCTGCAACAATAACAGTCCCACCAACCAAATGTTACAGGACACATGGTGAGAACAACAATTGCATTAACGATGTTGTGGCGAATTCCACAATAGATTCTGATATCGTGGAACTCGACACGGTGCAACTTCTCACAACTCACATTCACTTCTGCGAAATTTGTGGGAAAGGTTTCACGCGCAACGCGAATTTGCGCATGCACATGCGCGCACACGGAGACAAATTTAAAACACCCGAAGCATTGCGTTGCGTGAGGAAAACGCGCTTATCTGCGACGCGATTTTCATGTCCTTTTGAAGGATGCAAACGGAACAGGTTACACAAGAAGTTCACGCCGTTAAAATCAGTGTTATGTTTGAGAAACCATTTCAAGAGAAGTCACTGTCCGAAAACTTACATGTGCGATCGTTGTCGGAAAAAGAGTTTTGCGGTGGTTTCGGATTTGAAAAGTCACGTGAAACAGTGTAAGGGAGAGTCCACGTGGAAGTGTTCATGTGGAACAACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAACGGTTTGAGGGACATTCGCCGGCAGTTGTTGAGGTCGGCGATGAAGAGAAAGGAAAATCAATGGCGGCGGAAGAATGTGGGAGTGAAACTTTGACTAAGAAAAGTGATTGTTTGAATGGGTTACCAGAAGATTTCTTTGATGATTTGGACAAATTTTGGGCTTAA 930 0.4312 MHNHTEITQQPNNTNIPLHNLNELSTKMDSIQHYISQTINTNTLLPKHQLDTLSNQISNTIRQVIINATALLATCPATITVPPTKCYRTHGENNNCINDVVANSTIDSDIVELDTVQLLTTHIHFCEICGKGFTRNANLRMHMRAHGDKFKTPEALRCVRKTRLSATRFSCPFEGCKRNRLHKKFTPLKSVLCLRNHFKRSHCPKTYMCDRCRKKSFAVVSDLKSHVKQCKGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEVGDEEKGKSMAAEECGSETLTKKSDCLNGLPEDFFDDLDKFWA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04997 309 SMART c2h2final6 124 146 IPR013087 -
Trre7g04997 309 SMART c2h2final6 207 228 IPR013087 -
Trre7g04997 309 SMART c2h2final6 169 202 IPR013087 -
Trre7g04997 309 FunFam B-cell CLL/lymphoma 6, member B 123 146 - -
Trre7g04997 309 SUPERFAMILY beta-beta-alpha zinc fingers 123 147 IPR036236 -
Trre7g04997 309 Pfam Zinc-finger of C2H2 type 125 144 - -
Trre7g04997 309 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Trre7g04997 309 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 100 279 IPR044300 GO:0010044|GO:0010447
Trre7g04997 309 Gene3D Classic Zinc Finger 123 146 - -
Trre7g04997 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Trre7g04997 309 Gene3D Classic Zinc Finger 205 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04997 Trre-Chr7 56935855 56936784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04997 109 264 C2H2 Transcription Factor Family AT1G34370 55.556 1.02e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g04997 zf-met 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04997 - - cam:101510069 408.297