Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04975 ATGGACGAGGAAGAGCATGAGGTTTACGGAGGAGAGATCCCAGACGTGGCAGAGATGGAAGCTGACATTGACATGTCCGCCGCCGACGATGAAGCCAGTGGTATGAAGGAGCTCGACGAGATGAGACGCCGCTTGAAGGAAATGGAAGAAGAAGCCTCCGCTCTTCGCGAAATGCATGCTAAGGTCGAGAAGGAAATTGGCTCCGTTCAAGATCCTGCTGCTGTAGCTGCTTCTCAGGAAAACAGGGAGGAGGCTGATGCTCGGTCTGTTTTTGTCGGCAATGTTGATTATGCATGCACCCCAGAGGAAGTGCAGCAACACTTTCAGTCATGTGGTACAGTGAACAGGGTCACTATCCTGACAGATAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAGGCTCTCCTGTTAACTGAATCTGAATTGCATGGACGTCAATTGAAAGTTCTGCCTAAGAGGACTAATGTCCCTGGAATGAAACAATACCGTCCTAGGCGATTCAATCCTTACATGGCATATGGCTTCAGGAGGCCTTATACTCCTCCTTACATGTACTCCCCTTATGGATATGGGAAGGCTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCATATTATTAG 651 0.4777 MDEEEHEVYGGEIPDVAEMEADIDMSAADDEASGMKELDEMRRRLKEMEEEASALREMHAKVEKEIGSVQDPAAVAASQENREEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLTESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYTPPYMYSPYGYGKAPRFRRPNRYMPYY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04975 216 SUPERFAMILY RNA-binding domain, RBD 78 184 IPR035979 GO:0003676
Trre7g04975 216 Gene3D - 13 171 IPR012677 -
Trre7g04975 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 175 - -
Trre7g04975 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Trre7g04975 216 CDD RRM_II_PABPs 89 160 - -
Trre7g04975 216 Coils Coil 31 65 - -
Trre7g04975 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Trre7g04975 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04975 Trre-Chr7 56776303 56780790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04975 79 159 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 9.05e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04975 K14396 - gmx:100789721 390.578