Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04972 ATGGAACGATATGAGATTATTAAAGATATTGGCTCAGGAAACTTTGGTGTTGCAAAACTTGTAAGGGAAAAATGGAGTGATGAGTTATATGCTGTCAAGTTCATTGAAAGAGGCTCCAAGATTGATGAGCACGTGCAAAGGGAGATTATTAATCACAGGTCCTTGAAGCATCCCAATATTGTTAGATTTAAAGAGGTGTTGGTTACTCCAACTCATTTAGCAATAGTGATGGAATATGCTGCTGGGGGAGAATTGTTTGAAAGAATTTGTAGTGCTGGTAGATTCAGTGAGGATGAGGCAAGATATTTCTTCCAGCAACTGATTTCTGGAGTTAGCTATTGTCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTAGAAAACACACTTCTTGATGGAAGTTCAGCTCCTAGACTCAAAATATGTGACTTTGGTTACTCAAAGTCATCTGTTCTGCACTCTCAACCAAAATCAACTGTAGGGACCCCTGCTTATATTGCACCAGAGGTATTGTCAAGAAGAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGGGTTACTTTATATGTTATGCTTGTTGGTGCTTATCCTTTTGAAGATCCAGAAGACCCTAAAAACTTCAGAAAAACACTTCAAAGAATTCTTAGTGTACACTATTCAATTCCAGACTATGTACGTATTACACAAGAGTGCAGACATCTTTTATCAAGAATATTTGTTGCCAACCCTGAAAAGAGAATTACCATACCAGAGATTAAAAAGCATCCATGGTTCTTAAAGAATTTGCCACTAGAATTTTTTGAAGAGGGTCAAGGTAATTTTCAAAATGATGAAAATGGTTCATCTCAAAGCATAGAAGAAATATTGTCCATAATTCAAGAGGCTAGAAAAGCAGGGGATGGCCTAAAAGTTGGTGAACAGTTTGTTGGGGGCAGTATGGATCTTGATGATTTGGACACAGATGCTGACATTGATGACATTGAAACTAGCGGTGATTTTGTTTGTGCCTTATGA 1020 0.3745 MERYEIIKDIGSGNFGVAKLVREKWSDELYAVKFIERGSKIDEHVQREIINHRSLKHPNIVRFKEVLVTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTLQRILSVHYSIPDYVRITQECRHLLSRIFVANPEKRITIPEIKKHPWFLKNLPLEFFEEGQGNFQNDENGSSQSIEEILSIIQEARKAGDGLKVGEQFVGGSMDLDDLDTDADIDDIETSGDFVCAL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04972 339 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trre7g04972 339 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre7g04972 339 SUPERFAMILY Protein kinase-like (PK-like) 2 266 IPR011009 -
Trre7g04972 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Trre7g04972 339 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Trre7g04972 339 Gene3D Transferase(Phosphotransferase) domain 1 80 266 - -
Trre7g04972 339 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04972 339 PANTHER SERINE/THREONINE KINASE 2 277 - -
Trre7g04972 339 CDD STKc_SnRK2 3 259 - -
Trre7g04972 339 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Trre7g04972 339 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04972 339 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04972 Trre-Chr7 56757852 56760576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04972 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 44.238 1.64e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre7g04972 Pkinase 8.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04972 K14498 - gmx:100807981 615.92