Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04961 ATGAAGAGACTTGGCAGCTCTGATTATTTAGCTGCCCTCATGACCATTTGTCCACCATCAGAGGAACAAAGTCCAAGGAACAACGTGTATGGAAGGGAATTTCAGTCGATGTTAGAAGGATTAGATGAAGAAGGGTGTATTGAAGAACCAGGACAGAAGAAAAGAAGACTAAGTGTGGATCAAGTTAAGGCTTTAGAGAAGAATTTTGAAGTTGAAAATAAGCTTGAACCAGATAGAAAAGTTAAACTTGCTCAAGAACTTGGTTTGCAACCAAGACAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAAACAAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCCAATTATGATGCACTTAAACTTAATTATGATAATCTTCAACGTGACAATGAAAATTTGCTCAAAGAGGTTAAGGAATTGAAATCAAGATTACAATTACAAGAAGAAAACACAATCACTGAAAGTGATGTTTGTGTGAAACAAGAGTTGATAACATTGCAAGAATCAGAAAACACTGATTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGACTGTTTCAAAAACGGCGATGTTGTAGCTTCTCTGTTTCCTGCAGATTTCAAAGACGGTTCTTCAGATAGCGACTCGAGTGCAATCTTGAACGAAGAAAACAACAATAACAGTCCCAACGCAGCGATTTCTTCATCTGGGGTGTTTCAAAATCACAACTTTTTGATGTCTCCTGGTTCTTCTTCGCTTAAGTTCAATTGTTCAGAATCATCTTCGCCATCTTCAATGAGTAATAATTGCTTTCAGTTTCAGACACAGTATGTGAAAATGGAAGAGCATAATTTTCTAGGTACTGATGAGACTTGTGATTTTTTCTCAGATGAACAACCACCAACTCTTCAATGGTATTGTTCTGAAGAGTGGAATTAA 951 0.3712 MKRLGSSDYLAALMTICPPSEEQSPRNNVYGREFQSMLEGLDEEGCIEEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDNLQRDNENLLKEVKELKSRLQLQEENTITESDVCVKQELITLQESENTDSDETAILRSDSKDLNYDCFKNGDVVASLFPADFKDGSSDSDSSAILNEENNNNSPNAAISSSGVFQNHNFLMSPGSSSLKFNCSESSSPSSMSNNCFQFQTQYVKMEEHNFLGTDETCDFFSDEQPPTLQWYCSEEWN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04961 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 310 IPR045224 GO:0003700
Trre7g04961 316 Gene3D - 51 115 - -
Trre7g04961 316 Pfam Homeobox associated leucine zipper 108 150 IPR003106 GO:0006355|GO:0043565
Trre7g04961 316 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Trre7g04961 316 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Trre7g04961 316 SMART HOX_1 51 112 IPR001356 GO:0003677
Trre7g04961 316 CDD homeodomain 52 109 IPR001356 GO:0003677
Trre7g04961 316 FunFam homeobox-leucine zipper protein ATHB-6-like 56 102 - -
Trre7g04961 316 Pfam Homeodomain 53 106 IPR001356 GO:0003677
Trre7g04961 316 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Trre7g04961 316 SUPERFAMILY Homeodomain-like 48 110 IPR009057 -
Trre7g04961 316 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Trre7g04961 316 Coils Coil 107 155 - -
Trre7g04961 316 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04961 Trre-Chr7 56709525 56711605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04961 1 316 Homeobox Transcription Factor Family AT2G22430 46.398 4.62e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre7g04961 Homeodomain 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04961 K09338 - gmx:100796213 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04961 7 56709525 56711605 Trre7g04961 7 56709525 56711605 ECH
Trre7g04961 7 56709525 56711605 Trre5g03282 5 29109036 29110707 PCT