Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04927 ATGGCTCCCAGTTTATATATCCCTGCCCTTTTCTACTTGTCCTTAATTTTCTTCACTATCCCTGCTAATTCCATTTACTTCAAATATTCCAGTTTTAGTCTTAGTGATGCAAACTTAGTGTACCAAGGTTCTGCAGCACCTCGTGATGGCGAAGTTGATTTCAACATCAATAGACAATATTCATGTCAACTTGGAAGAATCTTGTATTCCGAAAAGGTCTTACTATGGGACTCAAACACAAATGAACTCACTGACTTCACAACTCGTTACAGTTTCATGATCAACACTCAAAATAGATCATCATATGGTCATGGTCTTGCCTTCTTCTTGGTTCCTTTTGGATTTGAAATCCCACTCAATTCTTATGGTGGCTTTATGGGCCTATTTAACACAACAACAATGGTTTCGTCTAGTAACCAAATTGTTCATGTGGAGTTTGATTCTTTAGCAAACGGTGAATTTCGCGAGACAACAGGACATGTCGGAATCAACAATAATTCAATCATATCATCAATCACGACACCATGGAATGCCAGCATACATAGTGGAGACACTGCTGATGTATTGGTTAGCTACAATTCAACAACCAAGAATTTAACTGTATCTTGGAAATACCAACTCACTACTGATCCTCAAGAAAATAATAGTCTTTCGTATTCGATTGATTTAATGAAAGTTATGCCTGAATGGATTACTGTTGGATTTTCAGCTACAACAAGTCATGTTGGGGAATTAAATTTTCTTTTGTCATGGGAATTCAACTCCACTTTGCAAAAAAGTGGTGATAATAATACAAAAGAGACAGGATTAGTTATAATACTAACGGTCTCTGGTGTGGCTTTAGTAGTGGGAGCAGTAGCAGCATATGCGTTACTTTGGTGGAAAAGAAAGAGAAGTGATAGGCAAAAGGAAGAGGCTATGCATTTAAGATCAATGAATAATGACCTTGAAAGAGAAGCAGGGCCAAGGAGGTTTACCTACGAAGAACTTGATTTCGCTACCAATAACTTCTCTAGTGGTAGAAAGTTGGGCGAAGGTGGATTCGGAGCTGTTTATAAAGGTTACTTTTTTGATCTAGATTTATCAGTTGCTGTGAAGAAAATATCAAGAGGATCAAGACAAGGGAAGAAAGAGTATGTGACTGAAGTTAAAGTCATTAGCCAACTTAGACATAGGAATCTTGTGAAGCTATTAGGTTGGTGTCATGATAAAGGCGAGTTTCTACTTGTTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGAACACCTCTTTCTTGGAGTGTAAGGCACAAAATAGCTCTTGGATTGGTCTCTTGTTTGCTCTATCTACATGAAGAATGGGAGAGGTGTGTGGTTCATAGAGATATCAAATCAAGCAATGTTATGCTAGATTCTAGTTTTAATGTTAAGCTTGGTGACTTTGGGTTGGCTAAGCTAATGGACCATGAGATTGGGCCCCAAACAACCGTCGTTGCCGGAACCTTAGGCTATATGGCTCCAGAATATATAAGTACAGGTAAGGCCAGCAAAGAGTCTGATGTCTATAGTTTTGGGGTTGTTGCCTTGGAGATTACAACTGGAAGGAAAGCTGTTGAAGTTATGAGTGACATTGATGGAGAGAAGGGATTGATTGAGTGGGTATGGGATCATTACGGAAGAGGGGAACTATTTGTGGCCATGGATGGAAATTTATTGAAGAATTTTGATGAGAAACAAGTAGAATGTTTGATGATTGTTGGTCTTTGGTCTGCTCATCCTGATGTAAATCTTAGACCGTCGATTAAACAAGTTACTAAAGTGCTTAATTTTGAGGCTGCTCTTCCAAATCTTCCCCCAAAGAAGCCTATTGCAACCTATCACGCTCCTCCACCGGTTGTAAGCTCGGTTGGAGTTTCCATAACCACAAGCCTTCAAGATGGTCGTTAA 1944 0.3884 MAPSLYIPALFYLSLIFFTIPANSIYFKYSSFSLSDANLVYQGSAAPRDGEVDFNINRQYSCQLGRILYSEKVLLWDSNTNELTDFTTRYSFMINTQNRSSYGHGLAFFLVPFGFEIPLNSYGGFMGLFNTTTMVSSSNQIVHVEFDSLANGEFRETTGHVGINNNSIISSITTPWNASIHSGDTADVLVSYNSTTKNLTVSWKYQLTTDPQENNSLSYSIDLMKVMPEWITVGFSATTSHVGELNFLLSWEFNSTLQKSGDNNTKETGLVIILTVSGVALVVGAVAAYALLWWKRKRSDRQKEEAMHLRSMNNDLEREAGPRRFTYEELDFATNNFSSGRKLGEGGFGAVYKGYFFDLDLSVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLSWSVRHKIALGLVSCLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHEIGPQTTVVAGTLGYMAPEYISTGKASKESDVYSFGVVALEITTGRKAVEVMSDIDGEKGLIEWVWDHYGRGELFVAMDGNLLKNFDEKQVECLMIVGLWSAHPDVNLRPSIKQVTKVLNFEAALPNLPPKKPIATYHAPPPVVSSVGVSITTSLQDGR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04927 647 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Trre7g04927 647 Pfam Protein kinase domain 338 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04927 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 266 IPR013320 -
Trre7g04927 647 Gene3D - 22 280 - -
Trre7g04927 647 Pfam Legume lectin domain 26 266 IPR001220 GO:0030246
Trre7g04927 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Trre7g04927 647 ProSiteProfiles Protein kinase domain profile. 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04927 647 SMART serkin_6 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04927 647 SUPERFAMILY Protein kinase-like (PK-like) 321 628 IPR011009 -
Trre7g04927 647 Gene3D Transferase(Phosphotransferase) domain 1 414 628 - -
Trre7g04927 647 FunFam L-type lectin-domain containing receptor kinase IX.1 322 413 - -
Trre7g04927 647 CDD lectin_legume_LecRK_Arcelin_ConA 25 257 IPR001220 GO:0030246
Trre7g04927 647 ProSitePatterns Protein kinases ATP-binding region signature. 343 367 IPR017441 GO:0005524
Trre7g04927 647 Coils Coil 299 319 - -
Trre7g04927 647 FunFam Lectin-domain containing receptor kinase A4.3 414 627 - -
Trre7g04927 647 CDD STKc_IRAK 343 608 - -
Trre7g04927 647 PANTHER - 57 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04927 Trre-Chr7 56297679 56299622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04927 24 626 Receptor kinase-like Gene Family AT5G10530 57.586 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre7g04927 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04927 - - jre:109014893 797.734