Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04912 ATGGGAGTGTTCAGCTTCGTCCTCAAAAAAACCGGCGCCGAATGGTCCGCAAAGCAATACTCCGGTGACATCGAGGCCTCCGGTGACTCTGCATTCGAGATCCAAAGGAATCTTGTTAAGGCCGTTCTCGCTGTCGATTCATCCGGCGGTGTTCAGTCCTCTTACTCTCCCGTCTCTCCTTCCTCTGGCGTCTTCGTGGTGATTGTTGGTGGTGCAGTATTTGTTGGTGGTGGAGCTGCCGCCGCTTCTCCTGCAGGAGGTGCTGCTCCAGCTGATGCTGCACCTGCTGAAGCAAAGAAAGAAGAAAAGGTTGAGGAAGAGGAGGAAGATGATGATATGGGATTCTCACTCTTTGATTAG 360 0.525 MGVFSFVLKKTGAEWSAKQYSGDIEASGDSAFEIQRNLVKAVLAVDSSGGVQSSYSPVSPSSGVFVVIVGGAVFVGGGAAAASPAGGAAPADAAPAEAKKEEKVEEEEEDDDMGFSLFD 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04912 119 MobiDBLite consensus disorder prediction 103 119 - -
Trre7g04912 119 Pfam 60s Acidic ribosomal protein 72 118 - -
Trre7g04912 119 MobiDBLite consensus disorder prediction 80 119 - -
Trre7g04912 119 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 119 IPR044252 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04912 Trre-Chr7 56232107 56232871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04912 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 64.706 2.84e-26 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04912 K02942 - atri:130810097 72.4034