Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04904 ATGTCAGAGACTAACGAGCGCGCCGCCACCGTCACCGCCGGTGGTGGTTACCGGAGTACATTTTCAAGGTCAGTTTCATGGACTGACCGTTCACCTTCAAACAGAAAACCACCTCATGCGGCGGGTAAAAACAGACAGCTTCGTCCTCTTTCTATTAACAAACGTAGCATTGAAGAATGGCCAAGTGCTGGATCTGACGATCTTGGTGTTTGGCCACAAGCAGATACACCAAGAGGAAGAGGTTCAATCATTGGTTCAGAGTTTCAGTTCAAAAGAGACAAGTTAGCTTTTTATGACAAAGAATGTTCTAGAATTGCTGAACATGTGTACTTAGGAAGTGACACTGTTGCTAAGAATCATGAGCTTCTAAGAAAAAATGGGATTACTCATGTGCTTAATTGTGTTGGATTTGTTTGTCCTGAATATTTCAAAAGTGAGTTTGTTTATAAAACTCTTTGGTTGCAGGATAGTCCAACGGAAGATATAACAAGTATTTTGTATGATGTTTTTGATTATTTTGAGGATGTTAGATTACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGTGTTTCTAGATCAACTTCTTTGGTCATTGCTTATCTTATGTGGAGAGAAGGACAAAGCTTTGAAGATGCTTTTCATTATGTCAAGAATGCTCGTGGTGTTACAAATCCTAACATGGGTTTTGCTTGTCAACTTTTGATGTGTCAGAAAAGAGTGGTAAATGGTAATGCTAATGTTATGCCTTTAAGTCCTAATTCTGTTCTTAGGATGTATAGAATGGCTCCTCATTCACCTTATGACCCTCTTCATGTGGTACCTAAAATGGTCGACAAGCCTTGTGCTAAAGCGCTCGATTCTCGTGGTGCTTTTATTGTTCATGTTCCTTCTGCTATATATGTTTGGATTGGTAAAAATTGTAGTTCTGTTATTTCTTGTAATGCACGATCTGCAGCTACGCAGGTTGTTCGTTATGAGAAAGCAAATGCTCCGATTCTTACCATTTGTGAAGGTGAAGAGCCAATGGAGTTTTGGGTTGCTCTTTCTAACCAGGAACTGGTGGAGAAGGAAACAATGGAAACTGATGATGATATGGGGATTCATCCTAGGAAAGTCGATGAGTACGATTTGGATTTTGGGATATTTCACAAAGCACTTGCTGGCGGTGTTGTTCCACCTTTTTCTGTGTCTAATACAGGATCAGAAACTTTGCTTCCTGCTAGAGAAAATGGCTGGGGAAGACTAAGGAGGAAGATTGCTAATAGTATCATGAAAGGTTTGTTTACATCCTCTAAATGTTGTGATACATCGTCACCAAAAGATGAATTATTAAGGGAGAATGTGGAAGAAGATGATAAACAACATTCAATTGTTGATCATTCCTCAAAGCATCTTTCTGGTTCATCTAATTACATTGAATATATTGTTGATCACAGCTCTGACAAGGCAAAAGATGGTCTTGTTTTCACGGATCGCTTTGTTCCTAATGTTGGTTCATCATTACCACCAACTCATCGAAAATCAGATTCTTTTCCTTTTTCTTTAAGTAACAGCCCAAAATTCAGTTCAAAGTCACCAACCCTTTCTCCTTCCAATTCTGATTGTGCTAGCTCCTTCACATTTTCGCCTGCGTCTACACATTGGTCTGATTTGTCATTCATGTCATCTCGGCAACCATCGCCTTCTTCCGGACTTGAATCATCTGAACAACCCTTTTATCTTAATAAAGATGCATCTTTGTTAGAAAGATCCTCTTCACTTCGCAACGCTGTTGTCTCTTCATCTTCAGAGACACTTTCGGTTAATCACAGCGTGGTAGGGACAAACTCCTACAAAGGGCCTAACTCTAACCTCTCCATTGCGGAGCGCAGAGGGAGTAAACCACCACCTCAAATGTTCGTAACTTCTGTTAGCGAATCATTGCGTGCTCACAAAGTTCTGGGTGAGAAGAGATGA 1959 0.4028 MSETNERAATVTAGGGYRSTFSRSVSWTDRSPSNRKPPHAAGKNRQLRPLSINKRSIEEWPSAGSDDLGVWPQADTPRGRGSIIGSEFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRKNGITHVLNCVGFVCPEYFKSEFVYKTLWLQDSPTEDITSILYDVFDYFEDVRLQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLMCQKRVVNGNANVMPLSPNSVLRMYRMAPHSPYDPLHVVPKMVDKPCAKALDSRGAFIVHVPSAIYVWIGKNCSSVISCNARSAATQVVRYEKANAPILTICEGEEPMEFWVALSNQELVEKETMETDDDMGIHPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETLLPARENGWGRLRRKIANSIMKGLFTSSKCCDTSSPKDELLRENVEEDDKQHSIVDHSSKHLSGSSNYIEYIVDHSSDKAKDGLVFTDRFVPNVGSSLPPTHRKSDSFPFSLSNSPKFSSKSPTLSPSNSDCASSFTFSPASTHWSDLSFMSSRQPSPSSGLESSEQPFYLNKDASLLERSSSLRNAVVSSSSETLSVNHSVVGTNSYKGPNSNLSIAERRGSKPPPQMFVTSVSESLRAHKVLGEKR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04904 652 SMART VILL_6 261 352 IPR007122 GO:0051015
Trre7g04904 652 Pfam Gelsolin repeat 278 346 IPR007123 -
Trre7g04904 652 ProSiteProfiles Dual specificity protein phosphatase domain profile. 101 243 IPR020422 GO:0006470|GO:0008138
Trre7g04904 652 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 160 221 IPR000387 GO:0016311|GO:0016791
Trre7g04904 652 MobiDBLite consensus disorder prediction 1 47 - -
Trre7g04904 652 Pfam Dual specificity phosphatase, catalytic domain 109 239 IPR000340 GO:0008138|GO:0016311
Trre7g04904 652 SMART dsp_5 101 240 IPR020422 GO:0006470|GO:0008138
Trre7g04904 652 MobiDBLite consensus disorder prediction 607 623 - -
Trre7g04904 652 PANTHER MKPA PROTEIN 17 643 - -
Trre7g04904 652 ProSitePatterns Tyrosine specific protein phosphatases active site. 185 195 IPR016130 GO:0016311|GO:0016791
Trre7g04904 652 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 243 IPR029021 -
Trre7g04904 652 MobiDBLite consensus disorder prediction 1 33 - -
Trre7g04904 652 MobiDBLite consensus disorder prediction 607 634 - -
Trre7g04904 652 Gene3D Protein tyrosine phosphatase superfamily 85 242 IPR029021 -
Trre7g04904 652 SUPERFAMILY Actin depolymerizing proteins 254 352 - -
Trre7g04904 652 CDD DSP 102 236 - -
Trre7g04904 652 Gene3D Severin 258 356 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04904 Trre-Chr7 56204690 56208315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04904 47 137 Protein tyrosine phosphatase (PTP) family AT3G55270 46.296 7.00e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04904 - - tpra:123917031 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04904 7 56204690 56208315 Trre7g04904 7 56204690 56208315 ECH
Trre7g04904 7 56204690 56208315 Trre5g03234 5 28470750 28473735 PCT