Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04860 ATGCATTTGTTTTCACATTCACTTATTCATTTTGCCTTATTAATGATCCTTATCCCCTTTCATTTCAACCACCTTTTTGTTGGTGTATCATCAACCACTCTAAGCATTATCACTGATAAACAAGCCTTAATCTCATTAAAGTCTCAATTAAGTAATAATGACTCTTCTAATTCTCATACATTATCATCTTGGAGCAAGAACTCATCTCCTTGCAATTGGACTGGTGTCTTATGTGACAAGCATAACCAAAGAGTTATTGGCTTAGATCTTTCAGGCTTTGGACTCTCAGGTAACTTAAGTCCTTATATAGGTAACTTATCCTCTCTTCAATCCCTACAATTGCAGGATAACAAGCTCACAGGAATCATTCCTAACCAAATCACCAATCTATATAGTTTGAGAGTTCTAAATATGAGTTCTAACCGATTCGAAGGAATGATCATCCCTTCAAATCTTACCAATTTAGATGAGCTTCAAATTCTTGATTTGTCCTCAAACAAGATTGTAAGTAAAATTCCTGAAGATATCAGCAGCTTGAAAAAGCTGCAGGTGTTGAAACTTGGAAGGAATAGCTTCTATGGTACAATTCCACAATCTCTAGGAAATATTTCTTCTCTAAAGAATATAAGCTTTGGCACTAACTCTCTTAGTGGTTGGATTCCTAGTGAATTAGGTAAGTTACATAATTTAATTGAGCTTGATCTTACTCTTAACAATCTTACCGGAACTGTTCCGCCAGGAATTTACAATTTGTCTTCCCTTGTTAACTTGGCCTTAGCTGCAAACTCCTTTTGGGGTGATTTACCTTATGATGTTGGTCATAAACTTCCAAAACTACTAGTTTTCAATTTTTGCTTCAATAAATTCACAGGTAGAATTCCAGGGTCTTTGCATAATCTCACAAACATTAGGGTCATTCGAATGGCGTTTAACCGTTTGGAAGGAACAGTTCCACCTGGTTTAGGAAACCTACCATTTCTTCACATGTATAATATTGGCTATAACAGGATAGTTACCAAAGGAGTCAATGGTTTGGACTTCGTTACTTCATTAACTAACAGCACTCACTTGAACTTTCTTGCAATTGATGGAAATTTGCTAGAAGGTGTGATTCCTGAAAGCATTGGAAATCTCTCTAAGGAGCTCTCCCAATTATACATGGGAGAGAACCGTTTCAATGGAAGCATACCATCTTCTATTGGTCGTCTTAGTGGTTTGAAGTTGTTAAATTTGAGCTACAATTCAATCAGTGGTGAGATTCCAAAGGAGTTAGGCCAGTTAGAGGAACTGCAAGAGCTATATCTTGATGGAAATAAGATATCAGGAGCTATTCCGAACTCTCTTGGTAATCTTATAAAGTTGAACAAGATTGATTTGTCGAAAAACGAACTTGTGAATAGAATACCAATCAGTTTTGGTAATTTTCAAAACTTGCTCTACATGGACTTATCTAGCAACAAACTCAATGGTAGCATACCTGTTGAAATCCTCAACCTACAAACTTTGAGCAATGTTTTAAACTTATCAAATAATTTTTTGAGTGGACCAATACCTGAAGTTGGGAAATTGACTACCATTGCCTCTATAGACTTTTCCAACAATCAATTATATGGAAGCATTCCAAGCTCATTCAGTAGTTGCTTGAGCTTGGAGAAATTGTTCTTATCCAAGAATATGCTTTCGGGTTCCATTCCGAAAGCTCTTGGAGAAGTGAGAGGCTTGGAAACTTTGGACTTGTCCTCCAACCTACTCTCTGGATCCATTCCTATTGAACTTCAAAACCTGCATGTCCTTAAGCTTTTAAACCTCTCTTACAATGATTTTGAAGGGTCGATTCCTAGCGACGGAGTTTTCCATAATCTATCTAATGTGCACTTAGTAGGCAATAAAAAATTATGCTTGCATTTTGCATGTGTGCCTCAAGTCCATAGAAGAACAAATGTCAGATTTTATATCATCATAGCTGTTGTGTTAACATTGGTAATATCTCTCCCAATTGGTTTGCTACTAATACTATACATGAAGTATACAAAGGTGAAGGTAACAGCAACAACACCATTTGAACAGCTAAATCCAAAGGTTCCAATGGTCTCTTACGACAAACTTCGATTAGCAACTAAGGAGTTCAGCCAAGAAAATTTAATAGGAATTGGGAGTTTTGGATCAGTGTATAAAGGCCAACTAAGTCAGGAAAATATTGTTGCAGTGAAAGTGCTCGATACTCAAAGAACAGGTTCTTTAAAGAGTTTCTTTGCAGAGTGCGAGACTATGAAGAACTCAAGGCATAGAAATTTGGTTAAGCTAATCACATCATGCTCTAGTGTTGACTTTAGAAACAATAGTTTTCTGGCTTTGGTGTATGAGTATATAAGTAATGGAAGCTTAGAAGATTGGATTAAGGGGAAGAGAAAGTATGAAAATGGAAATGGTTTGAACCTTATGGAGAGAGTGAATATAGCTATAGATGTTGCTTGTGCATTAGATTACCTGCACAATGACAGTGAAAATCCTATTGTGCACTGTGATCTAAAACCAAGCAATATTCTCCTCGATGAAGATATGACTGAAAAGGTTGGAGACTTCGGTTTGGCTAGATTACTGGTTCAAAGTTCAACTGATCAAGTTTCCATCAGCTCCACTCATGTCCTTAGAGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCTTCAACAGCAGGAGATGTGTATAGTTTTGGGATAGTGTTACTAGAGCTCTTCTCTGGAAAAAGTCCACAAGATGATTGCTTCACTGGAGACCTGAGCATAAGAAAATGGGTGCAATCAGCATTCAAAAACAAGGCTATACAAGTCATTGACACTCAGCTGTTATCTTTAATTTTCCATGATGATTCTGCTAGAGACTCCAATCTACAGCTTCATTGTGTGGATGCAATTATGGGAGTTGGCATGTCTTGCACTGCAGACAATCCGGATGATCGCATTGGCGTTAGAGTTGCTGTTCGCCAACTAAAAGCTGCTAGGGACAGTCTTTTGAACCAATCTAATATTTATATTAGGAGTCCTACTGATATTAAGAGGGGATCGGATTTCCCACGGTTATTGCGTCAACGCAGTAACCGTTATACAATGTCCGATAAAAAATAA 3138 0.3738 MHLFSHSLIHFALLMILIPFHFNHLFVGVSSTTLSIITDKQALISLKSQLSNNDSSNSHTLSSWSKNSSPCNWTGVLCDKHNQRVIGLDLSGFGLSGNLSPYIGNLSSLQSLQLQDNKLTGIIPNQITNLYSLRVLNMSSNRFEGMIIPSNLTNLDELQILDLSSNKIVSKIPEDISSLKKLQVLKLGRNSFYGTIPQSLGNISSLKNISFGTNSLSGWIPSELGKLHNLIELDLTLNNLTGTVPPGIYNLSSLVNLALAANSFWGDLPYDVGHKLPKLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMAFNRLEGTVPPGLGNLPFLHMYNIGYNRIVTKGVNGLDFVTSLTNSTHLNFLAIDGNLLEGVIPESIGNLSKELSQLYMGENRFNGSIPSSIGRLSGLKLLNLSYNSISGEIPKELGQLEELQELYLDGNKISGAIPNSLGNLIKLNKIDLSKNELVNRIPISFGNFQNLLYMDLSSNKLNGSIPVEILNLQTLSNVLNLSNNFLSGPIPEVGKLTTIASIDFSNNQLYGSIPSSFSSCLSLEKLFLSKNMLSGSIPKALGEVRGLETLDLSSNLLSGSIPIELQNLHVLKLLNLSYNDFEGSIPSDGVFHNLSNVHLVGNKKLCLHFACVPQVHRRTNVRFYIIIAVVLTLVISLPIGLLLILYMKYTKVKVTATTPFEQLNPKVPMVSYDKLRLATKEFSQENLIGIGSFGSVYKGQLSQENIVAVKVLDTQRTGSLKSFFAECETMKNSRHRNLVKLITSCSSVDFRNNSFLALVYEYISNGSLEDWIKGKRKYENGNGLNLMERVNIAIDVACALDYLHNDSENPIVHCDLKPSNILLDEDMTEKVGDFGLARLLVQSSTDQVSISSTHVLRGSIGYIPPEYGWGEKPSTAGDVYSFGIVLLELFSGKSPQDDCFTGDLSIRKWVQSAFKNKAIQVIDTQLLSLIFHDDSARDSNLQLHCVDAIMGVGMSCTADNPDDRIGVRVAVRQLKAARDSLLNQSNIYIRSPTDIKRGSDFPRLLRQRSNRYTMSDKK 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04860 1045 FunFam Receptor protein kinase CLAVATA1 35 197 - -
Trre7g04860 1045 Gene3D Phosphorylase Kinase; domain 1 680 789 - -
Trre7g04860 1045 Gene3D Ribonuclease Inhibitor 38 148 IPR032675 -
Trre7g04860 1045 SMART serkin_6 709 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04860 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Trre7g04860 1045 SUPERFAMILY L domain-like 39 337 - -
Trre7g04860 1045 SUPERFAMILY L domain-like 382 633 - -
Trre7g04860 1045 Pfam Leucine rich repeat 381 440 IPR001611 GO:0005515
Trre7g04860 1045 Pfam Leucine rich repeat 527 584 IPR001611 GO:0005515
Trre7g04860 1045 Pfam Leucine rich repeat 104 143 IPR001611 GO:0005515
Trre7g04860 1045 FunFam LRR receptor-like serine/threonine-protein kinase EFR 680 789 - -
Trre7g04860 1045 Pfam Leucine rich repeat N-terminal domain 38 79 IPR013210 -
Trre7g04860 1045 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 790 1013 - -
Trre7g04860 1045 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 237 343 - -
Trre7g04860 1045 Gene3D Transferase(Phosphotransferase) domain 1 790 1018 - -
Trre7g04860 1045 PANTHER OS04G0122200 PROTEIN 225 1003 - -
Trre7g04860 1045 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Trre7g04860 1045 Pfam Protein kinase domain 710 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04860 1045 Gene3D Ribonuclease Inhibitor 243 342 IPR032675 -
Trre7g04860 1045 Gene3D Ribonuclease Inhibitor 149 242 IPR032675 -
Trre7g04860 1045 SMART LRR_typ_2 475 499 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 227 251 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 571 594 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 300 324 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 155 179 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 106 129 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 595 620 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 427 451 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 130 154 IPR003591 -
Trre7g04860 1045 SMART LRR_typ_2 403 426 IPR003591 -
Trre7g04860 1045 FunFam LRR receptor-like serine/threonine-protein kinase EFR 344 644 - -
Trre7g04860 1045 ProSitePatterns Protein kinases ATP-binding region signature. 715 737 IPR017441 GO:0005524
Trre7g04860 1045 SUPERFAMILY Protein kinase-like (PK-like) 689 1001 IPR011009 -
Trre7g04860 1045 ProSiteProfiles Protein kinase domain profile. 709 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04860 1045 Gene3D Ribonuclease Inhibitor 343 641 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04860 Trre-Chr7 55935890 55939250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04860 38 1041 Receptor kinase-like Gene Family AT5G20480 40.856 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre7g04860 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04860 - - gmx:100783512 1522.29