Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04855 ATGAGGAGAAGAGGTCCATGCTTGCACTGCGGAATAACATTTGATCTACATTGGCGTCAAGGACCAAAGGACAAGCCAGTGTTGTGCAATTCATGTGGAATAAGATATAAAAATTGGGGAAACCTTGAAAACTATAGCCCAAGGCATTGTCCACAAAGCCACAACAATAATCTTCAAGTTGAGAAAGATGAAGAAGATTCTTCGAGCAACGATCAAGATTCAGAATCAGATAATGATACGAAGGTTCAAGTTCATGATAAGCCACAAAATAATGTAGATTTGAGTCAGCCACAAAAGACACTCAAGAGGACAAGGTCCAAAAGGAGGATGACAACTGCAAAGCTTCTTGGGAACTATAAGAAATGA 366 0.3962 MRRRGPCLHCGITFDLHWRQGPKDKPVLCNSCGIRYKNWGNLENYSPRHCPQSHNNNLQVEKDEEDSSSNDQDSESDNDTKVQVHDKPQNNVDLSQPQKTLKRTRSKRRMTTAKLLGNYKK 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04855 121 CDD ZnF_GATA 6 57 IPR000679 GO:0006355|GO:0043565
Trre7g04855 121 PANTHER OSJNBB0038F03.10 PROTEIN 7 88 IPR044589 -
Trre7g04855 121 ProSiteProfiles GATA-type zinc finger domain profile. 7 37 IPR000679 GO:0006355|GO:0043565
Trre7g04855 121 Pfam GATA zinc finger 7 38 IPR000679 GO:0006355|GO:0043565
Trre7g04855 121 MobiDBLite consensus disorder prediction 43 121 - -
Trre7g04855 121 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 57 - -
Trre7g04855 121 Gene3D - 1 75 IPR013088 GO:0006355|GO:0008270
Trre7g04855 121 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04855 Trre-Chr7 55908362 55910802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04855 1 50 C2C2-Gata Transcription Factor Family AT5G47140 54.000 5.31e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre7g04855 GATA 3.7e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04855 - - cam:101493109 105.916