Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04840 ATGAATCCAATTTTGATTCTTCTTATGATGTTCTTTCTCATCATAGTCACAGCAGATACAAATACAACATCAAACTCAACAACATGTCCTGTGTCTTTGAATTATGTCCAAACAGTTCCTTGGAATTCTTCACTATGTCTTAACTTCAAACCTTTACAATCCAAAACAGAAACACAACAAACTCTTTGTTGTCAAGCTCTTTTATCTCTCTTTGGTATAGCACTTGCTGAATATCTACACAAAAACTCACTTTTCCATTTCCATAACATACCTATCTCAGAAGCTTGTTTACAAAATTACCAATCTAACCTCACTTCACTTTCACTTCCTAACAATCTTGTTTCTTCATGTTTTGATCCATCTCAGTTTGTTTCAACTCCTAATACATGTGTTCAAATTCAAACTAAACAAGATTGGCTTAACCAAGTTAATTCCAATGATTTAACTGTTCTTGATAATGTTTGTGAACCAGATTTAACAGATCCTCGTCAATGTCAGGTTTGTCAAAATCAAGGTACTAAGGTTCAACAGATGCTGACTCAGATTGATGGGTTGTTGTATTTTTGGTATATTTGGTGGGTGAAGAAAAGAAAAAATGAAAATTTACTATCAGATAATAGTGGTGGTTCACATGTACCAAGTTTTAGTTTAAGGGTTAGACCGAAAAGTGGGTTGATTTGGTTTGAGTTTAAGGATCTTGTGAAGGTTACTGACAATTTTTCGGATGAAAATTTCATTGGAAGAGGCGGGTTTGGTTCGGTTTACAAGGGGGTTTTACCGGATGGGACTGTTGTTGCGGTTAAAAGGATTGAAGAGTCTGATTATCAAGGCGATGTTGAGTTTTATAGAGAGGTGGGGATTGTTAGTAGTTTGAAGCACCGTAATTTGGTGCCGCTAAGAGGGTGTTGTGTGGTTGGTGAAGATGTAAATCATGAGTACATTGGAAAGTATCTTGTTTATGATTATATGCCGAATGGTAATCTTAAAGACCATCTTTTTCCCGATATGGAGAATCAAAATGGGAAGCAATCTTTGACTTGGTCTCAAAGAAAAAACATAATCTTGGATGTGGCGAACGCGTTGGTTTATTTGCATTTTGGAGTCAAACCTCCTGTTTATCACAGAGATATCAAAGCTACCAATATACTACTTGATGCAGATTGGGTTTGGTCATTAATGAAATCCGGAAACATAGATAAGGCTTTGGATGTCTCTATCTCTATGGATGGAAATTCCACTAAAAGCACAATGGAGAGATTTTTAGTTGTTGGAATTTTGTGCTGTCATGTAGTGGTTGCTTTAAGGCCCACAATTTTGGATGCTTTGAAGATCTTTATAGCGAAAGCGCCTTATGGTTTTGTAACAGTTAAGGGTGCTAAAAGTGTAGAGTGGCCTGAACCTTGA 1404 0.364 MNPILILLMMFFLIIVTADTNTTSNSTTCPVSLNYVQTVPWNSSLCLNFKPLQSKTETQQTLCCQALLSLFGIALAEYLHKNSLFHFHNIPISEACLQNYQSNLTSLSLPNNLVSSCFDPSQFVSTPNTCVQIQTKQDWLNQVNSNDLTVLDNVCEPDLTDPRQCQVCQNQGTKVQQMLTQIDGLLYFWYIWWVKKRKNENLLSDNSGGSHVPSFSLRVRPKSGLIWFEFKDLVKVTDNFSDENFIGRGGFGSVYKGVLPDGTVVAVKRIEESDYQGDVEFYREVGIVSSLKHRNLVPLRGCCVVGEDVNHEYIGKYLVYDYMPNGNLKDHLFPDMENQNGKQSLTWSQRKNIILDVANALVYLHFGVKPPVYHRDIKATNILLDADWVWSLMKSGNIDKALDVSISMDGNSTKSTMERFLVVGILCCHVVVALRPTILDALKIFIAKAPYGFVTVKGAKSVEWPEP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04840 467 Pfam Protein kinase domain 241 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04840 467 FunFam Receptor-like serine/threonine-protein kinase At4g25390 207 322 - -
Trre7g04840 467 Pfam SPARK 24 182 IPR043891 -
Trre7g04840 467 Gene3D Phosphorylase Kinase; domain 1 212 322 - -
Trre7g04840 467 SUPERFAMILY Protein kinase-like (PK-like) 216 392 IPR011009 -
Trre7g04840 467 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 388 - -
Trre7g04840 467 Gene3D Transferase(Phosphotransferase) domain 1 323 396 - -
Trre7g04840 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Trre7g04840 467 ProSitePatterns Protein kinases ATP-binding region signature. 246 268 IPR017441 GO:0005524
Trre7g04840 467 SMART serkin_6 240 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04840 467 ProSiteProfiles Protein kinase domain profile. 240 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04840 Trre-Chr7 55748002 55750564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04840 381 445 Receptor kinase-like Gene Family AT1G11050 55.072 5.57e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre7g04840 Pkinase 2.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04840 - - gmx:100788367 397.897