LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g04810	ATGAATAACAGACGGTTGGAATTTGGGAGGCCTGTCTCAGGTAAAAGAAGATTGAAGGATTTAATGGTTCAAAAAGATAATCGCTTCTGTGCTGATTGTGGTGCTGCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGTTGCGGTGTGCACAGAAGTCTCGGTTCTCATATATCAAAGATTTTGTCGGTGACATTGGATGAATGGTCAAATGATGAAATAGATGCAATGATGGAAGTTGGAGGAAATGCTTCTGCTAATTCAATTTACGAGGCTTATATTCCAGAAGGATATACAAAGCCTGGACCAGATGCCAGTCATGAGCAACGTGAAAAATTTATCAGGTCAAAGTATGAGCGTCAAGAGTTTTTGAAACATAGTTTGCGCATTGTATCAACAAAAAGTGAACGTCGAGCAAGTTTCTCTAAAAGGATTATGGATAGCTTTCGATCTACTAGTGGTTCAAAAAATATGGAAGGAATGGTGGAATTTATTGGAATGTTGAAAGTTAAAGTAGTCCAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGCGACCCGTATGTTGTTTTAAAGCTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAATTTGGAATGAAGAACTTATGTTGTCAGTTCCTCGGCAATATGGACCAATAAATTTGAAGGTATTTGATCATGACTTGTTTTCGGCTGATGATATAATGGGAGAAGCAGATATTGATCTTCAACCTTTGATAACATCTGCAATGGCATTTGGTGATGCTGGAATGTTTGATGATATGAAAATAGGAAAATGGCTGAAATCGAATGATAATGCACTTATAGAAGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATTGCAATCAAGCTCCAAAATGTCGAATGTGGAGAATTATACTTAGAACTTGAATGGATGTCTCTTAATCAATAG	987	0.3678	MNNRRLEFGRPVSGKRRLKDLMVQKDNRFCADCGAADPKWASANIGVFVCLKCCGVHRSLGSHISKILSVTLDEWSNDEIDAMMEVGGNASANSIYEAYIPEGYTKPGPDASHEQREKFIRSKYERQEFLKHSLRIVSTKSERRASFSKRIMDSFRSTSGSKNMEGMVEFIGMLKVKVVQGTNLAIRDMMTSDPYVVLKLGQQTVQTTVIKSNLNPIWNEELMLSVPRQYGPINLKVFDHDLFSADDIMGEADIDLQPLITSAMAFGDAGMFDDMKIGKWLKSNDNALIEDSIVNIIDGKVKQEIAIKLQNVECGELYLELEWMSLNQ	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g04810	328	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	15	143	IPR001164	GO:0005096
	Trre7g04810	328	SMART	C2_3c	173	268	IPR000008	-
	Trre7g04810	328	Pfam	Putative GTPase activating protein for Arf	16	131	IPR001164	GO:0005096
	Trre7g04810	328	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	9	328	IPR044518	GO:0005096\|GO:0005543
	Trre7g04810	328	CDD	ArfGap	18	124	-	-
	Trre7g04810	328	Gene3D	Arf GTPase activating protein	9	136	IPR038508	-
	Trre7g04810	328	Gene3D	C2 domain	170	328	IPR035892	-
	Trre7g04810	328	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	131	IPR037278	-
	Trre7g04810	328	FunFam	Arf-GAP with dual PH domain-containing protein 1	10	138	-	-
	Trre7g04810	328	CDD	C2_ArfGAP	171	315	-	-
	Trre7g04810	328	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	170	328	-	-
	Trre7g04810	328	PRINTS	HIV Rev interacting protein signature	46	63	IPR001164	GO:0005096
	Trre7g04810	328	PRINTS	HIV Rev interacting protein signature	27	46	IPR001164	GO:0005096
	Trre7g04810	328	PRINTS	HIV Rev interacting protein signature	67	88	IPR001164	GO:0005096
	Trre7g04810	328	SMART	arf_gap_3	15	137	IPR001164	GO:0005096
	Trre7g04810	328	Pfam	C2 domain	173	262	IPR000008	-
	Trre7g04810	328	ProSiteProfiles	C2 domain profile.	154	269	IPR000008	-
	Trre7g04810	328	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	168	266	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g04810	Trre-Chr7	55434522	55437628	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g04810	8	328	C2H2 Transcription Factor Family	AT4G21160	72.727	0.0	516

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g04810	K12486		-	gmx:100777084	549.28