LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g04809	ATGGCAATGAATAACAGACGGTTGGAATTTGGGAGGCCTGTCTCAGGTAAAAGAAGATTGAAGGATTTAATGGTTCAAAAAGATAATCGCTTCTGTGCTGATTGTGGTGCTGCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGTTGCGGTGTGCACAGAAGTCTCGGTTCTCATATATCAAAGATTTTGTCGGTGACATTGGATGAATGGTCAAATGATGAAATAGATGCAATGATGGAAGTTGGAGGAAATGCTTCTGCTAATTCAATTTACGAGGCTTATATTCCAGAAGGATATACAAAGCCTGGACCAGATGCCAGTCATGAGCAACGTGAAAAATTTATCAGGTCAAAGTATGAGCGTCAAGAGTTTTTGAAACATAGTTTGCGCATTGTATCAACAAAAAGTGAACGTCGAGCAAGTTTCTCTAAAAGGATTATGGATAGCTTTCGATCTACTAGTGGTTCAAAAAATATGGAAGGAATGGTGGAATTTATTGGAATGTTGAAAGTTAAAGTAGTCCAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGCGACCCGTATGTTGTTTTAAAGCTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAATTTGGAATGAAGAACTTATGTTGTCAGTTCCTCGGCAATATGGACCAATAAATTTGAAGGTATTTGATCATGACTTGTTTTCGGCTGATGATATAATGGGAGAAGCAGATATTGATCTTCAACCTTTGATAACATCTGCAATGGCATTTGGTGATGCTGGAATGTTTGATGATATGAAAATAGGAAAATGGCTGAAATCGAATGATAATGCACTTATAGAAGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATTGCAATCAAGCTCCAAAATGTCGAATGTGGAGAATTATACTTAGAACTTGAATGGATGTCTCTTAATCAATAG	993	0.3686	MAMNNRRLEFGRPVSGKRRLKDLMVQKDNRFCADCGAADPKWASANIGVFVCLKCCGVHRSLGSHISKILSVTLDEWSNDEIDAMMEVGGNASANSIYEAYIPEGYTKPGPDASHEQREKFIRSKYERQEFLKHSLRIVSTKSERRASFSKRIMDSFRSTSGSKNMEGMVEFIGMLKVKVVQGTNLAIRDMMTSDPYVVLKLGQQTVQTTVIKSNLNPIWNEELMLSVPRQYGPINLKVFDHDLFSADDIMGEADIDLQPLITSAMAFGDAGMFDDMKIGKWLKSNDNALIEDSIVNIIDGKVKQEIAIKLQNVECGELYLELEWMSLNQ	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g04809	330	CDD	ArfGap	20	126	-	-
	Trre7g04809	330	SMART	arf_gap_3	17	139	IPR001164	GO:0005096
	Trre7g04809	330	CDD	C2_ArfGAP	173	317	-	-
	Trre7g04809	330	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	11	330	IPR044518	GO:0005096\|GO:0005543
	Trre7g04809	330	Gene3D	Arf GTPase activating protein	9	138	IPR038508	-
	Trre7g04809	330	FunFam	Arf-GAP with dual PH domain-containing protein 1	12	140	-	-
	Trre7g04809	330	Pfam	C2 domain	175	264	IPR000008	-
	Trre7g04809	330	Gene3D	C2 domain	172	330	IPR035892	-
	Trre7g04809	330	SUPERFAMILY	ArfGap/RecO-like zinc finger	17	133	IPR037278	-
	Trre7g04809	330	ProSiteProfiles	C2 domain profile.	156	271	IPR000008	-
	Trre7g04809	330	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	17	145	IPR001164	GO:0005096
	Trre7g04809	330	SMART	C2_3c	175	270	IPR000008	-
	Trre7g04809	330	Pfam	Putative GTPase activating protein for Arf	18	133	IPR001164	GO:0005096
	Trre7g04809	330	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	172	330	-	-
	Trre7g04809	330	PRINTS	HIV Rev interacting protein signature	48	65	IPR001164	GO:0005096
	Trre7g04809	330	PRINTS	HIV Rev interacting protein signature	29	48	IPR001164	GO:0005096
	Trre7g04809	330	PRINTS	HIV Rev interacting protein signature	69	90	IPR001164	GO:0005096
	Trre7g04809	330	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	170	268	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g04809	Trre-Chr7	55434516	55437628	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g04809	10	330	C2H2 Transcription Factor Family	AT4G21160	72.727	0.0	516

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g04809	K12486		-	gmx:100777084	549.28